Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50790 200 / 2e-63 SWEET10, AtSWEET10 Nodulin MtN3 family protein (.1) AT5G13170 175 / 2e-53 SAG29, SWEET15, AtSWEET15 senescence-associated gene 29 (.1) AT3G48740 171 / 4e-52 SWEET11, AtSWEET11 Nodulin MtN3 family protein (.1) AT5G23660 169 / 2e-51 MTN3, SWEET12, AtSWEET12 homolog of Medicago truncatula MTN3 (.1) AT5G50800 157 / 1e-46 SWEET13, AtSWEET13 Nodulin MtN3 family protein (.1) AT2G39060 149 / 1e-43 SWEET9, AtSWEET9 Nodulin MtN3 family protein (.1) AT4G25010 147 / 4e-43 SWEET14, AtSWEET14 Nodulin MtN3 family protein (.1) AT1G21460 115 / 5e-31 SWEET1, AtSWEET1 Nodulin MtN3 family protein (.1) AT4G15920 114 / 2e-30 SWEET17, AtSWEET17 Nodulin MtN3 family protein (.1) AT3G16690 99 / 6e-25 SWEET16, AtSWEET16 Nodulin MtN3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032553 [exp] 422 / 2e-150 AT5G50790 279 / 9e-94 Nodulin MtN3 family protein (.1) Lus10016742 [exp] 312 / 2e-107 AT5G50790 291 / 2e-98 Nodulin MtN3 family protein (.1) Lus10022436 [exp] 306 / 7e-105 AT5G50790 285 / 5e-96 Nodulin MtN3 family protein (.1) Lus10015754 [exp] 164 / 3e-49 AT5G13170 289 / 7e-98 senescence-associated gene 29 (.1) Lus10023249 [exp] 161 / 1e-48 AT5G50790 246 / 2e-81 Nodulin MtN3 family protein (.1) Lus10008861 [exp] 161 / 1e-48 AT5G50790 246 / 1e-81 Nodulin MtN3 family protein (.1) Lus10000310 [exp] 162 / 2e-48 AT5G13170 295 / 3e-100 senescence-associated gene 29 (.1) Lus10024770 [exp] 157 / 1e-46 AT5G23660 259 / 4e-86 homolog of Medicago truncatula MTN3 (.1) Lus10009782 [exp] 156 / 2e-46 AT5G23660 261 / 8e-87 homolog of Medicago truncatula MTN3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G101400 [exp] 231 / 7e-76 AT5G50790 276 / 7e-93 Nodulin MtN3 family protein (.1) Potri.015G101600 [exp] 231 / 1e-75 AT5G50790 276 / 1e-92 Nodulin MtN3 family protein (.1) Potri.015G101500 [exp] 229 / 8e-75 AT5G50790 291 / 6e-99 Nodulin MtN3 family protein (.1) Potri.012G103200 [exp] 225 / 2e-73 AT5G50790 230 / 1e-74 Nodulin MtN3 family protein (.1) Potri.003G166800 [exp] 179 / 3e-55 AT5G13170 290 / 3e-98 senescence-associated gene 29 (.1) Potri.015G101700 [exp] 169 / 2e-51 AT5G23660 312 / 3e-107 homolog of Medicago truncatula MTN3 (.1) Potri.001G060900 [exp] 156 / 3e-46 AT5G13170 294 / 9e-100 senescence-associated gene 29 (.1) Potri.019G030500 [exp] 145 / 1e-42 AT2G39060 272 / 3e-92 Nodulin MtN3 family protein (.1) Potri.005G187300 [exp] 118 / 5e-32 AT1G21460 365 / 6e-129 Nodulin MtN3 family protein (.1) Potri.005G023900 [exp] 108 / 1e-28 AT3G16690 190 / 2e-60 Nodulin MtN3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0141 [flax] [poplar] MtN3-like PF03083 [flax] [poplar] MtN3_slv Sugar efflux transporter for intercellular exchange
Representative CDS sequence Show only first row Show all	>Lus10043190 pacid=23168104 polypeptide=Lus10043190 locus=Lus10043190.g ID=Lus10043190.BGIv1.0 annot-version=v1.0 ATGGCAGTCCACTTCTCTTTGGTGTTCCTCTTCGGCCTTCTCGGGAACGCCATCTCCTGCTTCGTATGCTTGGCTCCAATGCCCACCTTCTACCAGATTT GGAAGAAGAAGACCAGCGAAGGATACCAGTCCATCCCTTACGTCATCGGACTCTTCAGCGCCATGCTTTGGCTCTTCTACGCCATGTTCGCTAAAGACGC CATGCTCCTCATCACCATCAACGTCTTCACCTTCATCATGCAGACCTTCTACATTTCCATCTACCTCTTCTACGCCAACAAATCCGACAGGGTCACGGAC TACGATACATATTCGCAGAGGAAAGCGATCAAAACCAAGAGCGTGGAGTTCATGCCCATCTCCCTCTCCTTCTTCCTCACCCTCAGCGCCGTCATGTGGT TCATGTACGGTTTCCTCAAGAAAGACCCTTACGTCGCTGTTCCGAACATTCTGGGGTTGACCTTCGGAATCCTGCAGATGGTGCTCTACCTAATCTACCG TAAGACCACTCCTGCTCCGGCAAGCAAGAAGGCGGCGGAGATCAAGGAGGTGGGGCCAGCACAAGTACAGGTAGTGATCGACGTGGCAAAGCTGGGAGGA GAGCAGCCCAACAAGCAAGTGATACCAGTCAACGCGGCCGCCGCTGTCCCTCAGGAGCTGATCATCGAACTGATTAACGTTGTTGCTGCGGCGGAGGAGG AAGAGGCCGAACGCGTCAAGCATATGAACAGCAAGAAAGACATGGCCATACGCAGCGCCGCCGTCGCCGTTGCATGA
AA sequence Show only first row Show all	>Lus10043190 pacid=23168104 polypeptide=Lus10043190 locus=Lus10043190.g ID=Lus10043190.BGIv1.0 annot-version=v1.0 MAVHFSLVFLFGLLGNAISCFVCLAPMPTFYQIWKKKTSEGYQSIPYVIGLFSAMLWLFYAMFAKDAMLLITINVFTFIMQTFYISIYLFYANKSDRVTD YDTYSQRKAIKTKSVEFMPISLSFFLTLSAVMWFMYGFLKKDPYVAVPNILGLTFGILQMVLYLIYRKTTPAPASKKAAEIKEVGPAQVQVVIDVAKLGG EQPNKQVIPVNAAAAVPQELIIELINVVAAAEEEEAERVKHMNSKKDMAIRSAAVAVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13170		SAG29, SWEET15,...	senescence-associated gene 29 ...		Lus10043190 [exp]	0	1
AT2G16700		ADF5, ATADF5	actin depolymerizing factor 5 ...		Lus10025049 [exp]	2.6	0.7573
AT2G31800			Integrin-linked protein kinase...		Lus10008350 [exp]	3.7	0.7005
AT5G40960			Protein of unknown function (D...		Lus10012541 [exp]	5.3	0.6513
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10040224 [exp]	7.1	0.6937
AT1G73320			S-adenosyl-L-methionine-depend...		Lus10031894 [exp]	10.6	0.6733
AT5G01580		OSH1	OAS HIGH ACCUMULATION 1, gamma...		Lus10002203 [exp]	12.1	0.6419
AT4G34970		ADF9	actin depolymerizing factor 9 ...		Lus10034494 [exp]	12.7	0.6740
AT2G39940		COI1	CORONATINE INSENSITIVE 1, RNI-...		Lus10028265 [exp]	21.0	0.6851
AT3G62950			Thioredoxin superfamily protei...		Lus10005938 [exp]	26.5	0.6459
AT5G65660			hydroxyproline-rich glycoprote...		Lus10032818 [exp]	28.3	0.6845

Compare expression of checked genes

Lus10043190 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.