Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50850 634 / 0 MAB1 MACCI-BOU, Transketolase family protein (.1) AT1G30120 282 / 7e-86 PDH-E1 BETA, PDH-E1BETA pyruvate dehydrogenase E1 beta (.1) AT2G34590 280 / 4e-85 Transketolase family protein (.1) AT1G55510 224 / 2e-65 BCDH BETA1, BCDHBETA1 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) AT3G13450 224 / 2e-65 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT4G15560 72 / 1e-12 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 68 / 2e-11 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 59 / 2e-08 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032549 [exp] 750 / 0 AT5G50850 628 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10032550 [exp] 665 / 0 AT5G50850 613 / 0.0 MACCI-BOU, Transketolase family protein (.1) Lus10038505 [exp] 278 / 1e-84 AT2G34590 693 / 0.0 Transketolase family protein (.1) Lus10023304 [exp] 278 / 2e-84 AT2G34590 687 / 0.0 Transketolase family protein (.1) Lus10013401 [exp] 221 / 3e-63 AT1G55510 622 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10010324 [exp] 216 / 3e-62 AT1G55510 619 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Lus10039361 [exp] 151 / 7e-43 AT5G50850 135 / 9e-40 MACCI-BOU, Transketolase family protein (.1) Lus10010261 [exp] 70 / 8e-14 ND / Lus10013117 [exp] 71 / 5e-12 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G061400 [exp] 670 / 0 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.003G166400 [exp] 668 / 0 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.017G076500 [exp] 282 / 5e-86 AT2G34590 671 / 0.0 Transketolase family protein (.1) Potri.004G129800 [exp] 278 / 2e-84 AT2G34590 634 / 0.0 Transketolase family protein (.1) Potri.003G222800 [exp] 218 / 4e-63 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1) Potri.006G249700 [exp] 71 / 4e-12 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.007G058500 [exp] 69 / 2e-11 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 67 / 5e-11 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 62 / 2e-09 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 58 / 3e-08 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10043191 pacid=23168119 polypeptide=Lus10043191 locus=Lus10043191.g ID=Lus10043191.BGIv1.0 annot-version=v1.0 ATGGGTTGTAGTTCATCAAAACTGGATCGTTTGGGGGACGTGCTAATGGTTCCTGCAAAGATCCGACCCGTGTTGTGGCGAAAGCTTGAACACATCAAGG CTCGTACAAGGAGAGGCGGCTCTTCCAGGAAAGAGCTTCTCAGGGACACTGGCTACCATACCCTCTCTGCAACTACTTCCTCCAATCATTACTACGTCCA TAGCCAAAGAGGGTCCACCATTCATGACGAAAGCATCAAGAACACCAAGCAACACGAAACTTGTGACGAATTTAAGGATGCAGTTGAGGGTCTCCCTGAA AGCCCTACACCTGGGACTCCCAAGACCAAGACGACAGATGATCAGTTGGAGGAGGAGGATAAGCTTATTATAAGTATGGTGGCTGCTGAGTTCCTCTCAT GGAGCGAAATGAGAGCACAATCCAAATGGCACGAGGCTGAGGAGATTGGTTACGACGATAATGATGATGATGATGAGGAAGACGATGAAGACCTTCGAGC AAGATGTATAGCCCAGGGGTCTCCGAGCTTCAGGCCTCTGCAAGGAACTCGCCCTGGGATTCAAATGTTAAGGAGTTTCTCCACCGCAGCAAAAGAGATG AATGTGAGGGAAGCTCTCAATTCTGCGATCGATGAAGAAATGTCTGCGGATCCAAAAGTCTTTCTGATGGGAGAGGAGGTTGGCGAATATCAAGGTGCAT ACAAGATCACTAAAGGTCTCTTGGAGAAGTATGGTCCTGACAGAGTTCTCGATACTCCAATTACCGAGGCTGGATTTACTGGTATTGGAGTTGGCGCAGC TTATCATGGGCTTAAGCCTATTGTTGAATTCATGACATTCAACTTCTCCATGCAGGCTATTGATCATATCATCAATTCTGCTGCAAAATCAAACTACATG TCTGCGGGTCAGATTTCTGTACCTATAGTTTTCAGGGGACCTAATGGTGCGGCTGCTGGAGTCGGTGCCCAGCATTCACATTGCTATGCAGCGTGGTATG CTTCCTGCCCCGGTCTGAAGGTCCTTGCTCCTTATTCATCAGAAGATGCTCGTGGTCTTATGAAGGCTGCCATAAGAGACCCAGATCCAGTTGTCTTCCT GGAAAATGAGCTATTGTATGGAGAGTCTTTTCCAGTTTCTGAAGAAGTTCTTGATTCTAGTTTCTGTCTCCCCATAGGGAAAGCTAAGATTGAAAGGGAA GGCAAGGACGTAACCATCACTGCTTTCTCAAAGATGGTTGGTTATGCTCTCAAGGCTGCTGATATTCTTGCAAAAGAAGGAATAAGTGCCGAGGTTATAA ATCTTCGATCTATTCGTCCGCTTGATCGATCCACAATCAACAACTCTGTCAGAAAAACAAACAGACTCGTTACGGTCGAAGAAGGTTTCCCTCAGCATGG AATTGGTGCTGAGATATGTGCGTCAGTCGTTGAGGAGAGCTTTGGATATCTTGATGCGCCCGTTGAGAGGATTGCCGGAGCAGACGTACCGATGCCTTAC GCTGCAAACCTAGAGAGATTGGCTGTCCCTCAGACCTCCAAGCCGAGTTACTTTGTCCTAAGACGTCCTCTTTCAACCCAGGAATGTGCCACATCAAACA GCACACAATTCGGTGCCCCAGAGGTGAAAAAATCCATTCCGGAACTTCCGTTCGGCATTGCCAGCATTGCTGAATTTTACGACGCCGGAGAGTTCTTGAA TCTCGACGCTCCAGACGCAACTACCTGCTTGAATCTGGGTTTTCGTCTTCCGATATTCGTGAACGTTTCTGTACAAATCGGTAAGAAGACGGTGAGAATG TGGGGGATCGTTCGACAAAGTCTTTGCCGCCATGGATCTTCGGCTGTGCCTCTGCAAGGAACTCACCCTGGGATTCAAATGTTAAGGAGTTTCTCCACCG CAGCAAAAGAGATGAATGTGAGGGAAGCTCTCAATTCTGCGATTGATGAAGAAATGTCTGCTGATCCAAAAGTCTTTCTAATGGGAGAGGAGGTTGGAGA ATATCAAGGTGCATACAAGATTACTAAAGGTCTCCTGGAGAAGTATGGTCCTGACAGAGTCCTTGATACCCCAATTACCGAGGCTGGATTTACTGGTATT GGAGTTGGCGCAGCTTATCATGGGCTTAAGCCTATTATCGAATTCATGACATTCAACTTCTCCATGCAGGCTATTGATCATATCATTAATTCGGCTGCAA AATCAAATTACATGTCTGCTGGTCAAATTTCTGTACCTATAGTCTTCAGGGGACCGAATGGTGCGGCTGCTGGAGTCGGTGCCCAGCATTCACATTGTTA TGCAGCATGGTATGCTTCCTGCCCTGGTCTGAAGGTCCTTGCTCCCTACTCATCAGAAGATGCTCGCGGTCTTATGAAGGCTGCCATAAGAGACCCAGAT CCAGTTGTCTTCCTGGAAAATGAGCTATTGTATGGTGAGTCTTTTCCAGTTTCAGAAGAAGTTCTTGATTCTAGTTTCTGTCTTCCCATAGGGAAAGCTA AGATTGAAAGAGAAGGCAAGGACGTAACCATCACTGCTTTCTCAAAGATGGTTGGTTATGCTCTCAAGGCTGCTGATATTCTTGCAAAAGAAGGAATAAG TGCCGAGGTTATAAATCTTCGATCTATTCGTCCGCTTGATCGATCCACAATCAACAACTCTGTCAGAAAAACAAACAGACTCGTTACGGTCGAAGAAGGT TTCCCTCAGCATGGAATTGGTGCTGAGATATGTGCGTCAGTCGTGGAGGAGAGCTTCGGATATCTTGATGCGCCCGTTGAGAGGATTGCCGGAGCAGACG TACCGATGCCTTACGCTGCAAACCTAGAGAGATTGGCTGTCCCTCAGGTTGAAGATATTGTTCGTGCGGCCAAGAGGACTTGCTACAGATCAGCAGCAGC AACTTCATTGGCTGCAGCAGCGTAG
AA sequence Show only first row Show all	>Lus10043191 pacid=23168119 polypeptide=Lus10043191 locus=Lus10043191.g ID=Lus10043191.BGIv1.0 annot-version=v1.0 MGCSSSKLDRLGDVLMVPAKIRPVLWRKLEHIKARTRRGGSSRKELLRDTGYHTLSATTSSNHYYVHSQRGSTIHDESIKNTKQHETCDEFKDAVEGLPE SPTPGTPKTKTTDDQLEEEDKLIISMVAAEFLSWSEMRAQSKWHEAEEIGYDDNDDDDEEDDEDLRARCIAQGSPSFRPLQGTRPGIQMLRSFSTAAKEM NVREALNSAIDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPDRVLDTPITEAGFTGIGVGAAYHGLKPIVEFMTFNFSMQAIDHIINSAAKSNYM SAGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASCPGLKVLAPYSSEDARGLMKAAIRDPDPVVFLENELLYGESFPVSEEVLDSSFCLPIGKAKIERE GKDVTITAFSKMVGYALKAADILAKEGISAEVINLRSIRPLDRSTINNSVRKTNRLVTVEEGFPQHGIGAEICASVVEESFGYLDAPVERIAGADVPMPY AANLERLAVPQTSKPSYFVLRRPLSTQECATSNSTQFGAPEVKKSIPELPFGIASIAEFYDAGEFLNLDAPDATTCLNLGFRLPIFVNVSVQIGKKTVRM WGIVRQSLCRHGSSAVPLQGTHPGIQMLRSFSTAAKEMNVREALNSAIDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEKYGPDRVLDTPITEAGFTGI GVGAAYHGLKPIIEFMTFNFSMQAIDHIINSAAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSHCYAAWYASCPGLKVLAPYSSEDARGLMKAAIRDPD PVVFLENELLYGESFPVSEEVLDSSFCLPIGKAKIEREGKDVTITAFSKMVGYALKAADILAKEGISAEVINLRSIRPLDRSTINNSVRKTNRLVTVEEG FPQHGIGAEICASVVEESFGYLDAPVERIAGADVPMPYAANLERLAVPQVEDIVRAAKRTCYRSAAATSLAAAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50850		MAB1	MACCI-BOU, Transketolase famil...		Lus10043191 [exp]	0	1
AT5G40810			Cytochrome C1 family (.1.2)		Lus10022328 [exp]	2.0	0.8737
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10036485 [exp]	4.7	0.8747
AT5G14670		ATARFA1B	ADP-ribosylation factor A1B (....		Lus10029144 [exp]	6.0	0.8518
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Lus10036337 [exp]	8.3	0.8729
AT3G16760			Tetratricopeptide repeat (TPR)...		Lus10016826 [exp]	8.4	0.8532
AT3G01120		AtCGS1, ATCYS1,...	METHIONINE OVERACCUMULATION 1,...		Lus10005226 [exp]	9.9	0.8504
AT1G78240		OSU1, TSD2, QUA...	TUMOROUS SHOOT DEVELOPMENT 2, ...		Lus10010353 [exp]	13.9	0.8500
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	16.4	0.8640
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10036456 [exp]	17.7	0.8010
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10029766 [exp]	17.7	0.7696

Compare expression of checked genes

Lus10043191 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.