Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03540 55 / 4e-10 Uncharacterised protein family (UPF0497) (.1) AT1G03700 54 / 9e-10 Uncharacterised protein family (UPF0497) (.1) AT2G27370 54 / 1e-09 CASP3 Casparian strip membrane domain protein 3, Uncharacterised protein family (UPF0497) (.1) AT5G15290 53 / 3e-09 CASP5 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) AT1G14160 47 / 7e-07 Uncharacterised protein family (UPF0497) (.1) AT4G16442 44 / 5e-06 Uncharacterised protein family (UPF0497) (.1) AT4G15630 42 / 4e-05 Uncharacterised protein family (UPF0497) (.1) AT2G36100 41 / 6e-05 CASP1 Casparian strip membrane domain protein 1, Uncharacterised protein family (UPF0497) (.1) AT4G15620 41 / 7e-05 Uncharacterised protein family (UPF0497) (.1) AT3G06390 40 / 0.0001 Uncharacterised protein family (UPF0497) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032548 [exp] 166 / 1e-52 AT1G03700 62 / 3e-14 Uncharacterised protein family (UPF0497) (.1) Lus10012562 [exp] 71 / 1e-15 AT4G15620 77 / 1e-17 Uncharacterised protein family (UPF0497) (.1) Lus10041528 [exp] 68 / 3e-15 AT4G15620 74 / 5e-17 Uncharacterised protein family (UPF0497) (.1) Lus10031998 [exp] 67 / 2e-14 AT4G15620 80 / 1e-18 Uncharacterised protein family (UPF0497) (.1) Lus10035168 [exp] 65 / 1e-13 AT4G15620 78 / 8e-18 Uncharacterised protein family (UPF0497) (.1) Lus10032005 [exp] 64 / 2e-13 AT4G15620 65 / 1e-13 Uncharacterised protein family (UPF0497) (.1) Lus10033971 [exp] 53 / 2e-09 AT4G15630 162 / 1e-51 Uncharacterised protein family (UPF0497) (.1) Lus10033007 [exp] 50 / 4e-08 AT5G15290 216 / 3e-72 Casparian strip membrane domain protein 5, Uncharacterised protein family (UPF0497) (.1) Lus10012809 [exp] 50 / 4e-08 AT4G15630 179 / 4e-57 Uncharacterised protein family (UPF0497) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G104300 [exp] 72 / 2e-16 AT4G25040 97 / 7e-26 Uncharacterised protein family (UPF0497) (.1) Potri.015G103600 [exp] 66 / 6e-14 AT4G25040 90 / 9e-23 Uncharacterised protein family (UPF0497) (.1) Potri.001G323700 [exp] 60 / 1e-11 AT4G15620 75 / 8e-17 Uncharacterised protein family (UPF0497) (.1) Potri.017G062100 [exp] 57 / 1e-10 AT4G25040 82 / 6e-20 Uncharacterised protein family (UPF0497) (.1) Potri.019G100300 [exp] 50 / 2e-08 AT1G03700 150 / 6e-47 Uncharacterised protein family (UPF0497) (.1) Potri.013G131700 [exp] 50 / 4e-08 AT1G03700 159 / 9e-50 Uncharacterised protein family (UPF0497) (.1) Potri.004G043300 [exp] 41 / 5e-05 AT4G03540 103 / 2e-28 Uncharacterised protein family (UPF0497) (.1) Potri.011G052100 [exp] 41 / 7e-05 AT4G03540 100 / 2e-27 Uncharacterised protein family (UPF0497) (.1) Potri.011G154900 [exp] 39 / 0.0003 AT4G20390 169 / 1e-53 Uncharacterised protein family (UPF0497) (.1) Potri.008G205100 [exp] 39 / 0.0004 AT4G15630 144 / 1e-43 Uncharacterised protein family (UPF0497) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0396 [flax] [poplar] Marvel-like PF04535 [flax] [poplar] DUF588 Domain of unknown function (DUF588)
Representative CDS sequence Show only first row Show all	>Lus10043192 pacid=23168285 polypeptide=Lus10043192 locus=Lus10043192.g ID=Lus10043192.BGIv1.0 annot-version=v1.0 ATGGCGGCCATTACTGATGATGATCTTCAAAAGTACTCATCACAACACACTGAGTTCTTCGTGGTGGCGAACTTGGTGGGTTCCGCATTCTCGCTGCTTC CGCTGCTGTATTTAGTCAAGAGGCGAACTCGCTCCCTGTACATTCCGCCGCCGCAGCACTACGCTTTCTTCCTCTTCTTCCACGACTCGGTGATCACGGC GATTCTGCTGGCGGGGTGTTCCGCCGCCACGGCGATCGGACTGGTGGCGGAAAACGGAGTGGCCAGCTCTGGTTGGATGCCCATTTGCAACCGCTTCCAC CGTTTCTGCAACGTAGGAGCCGTCTCTCTCGCTCTCTCTTACTCGTCATTTCTCTCTTTCTTCATCCTCACCATCCTGTCCGCCGCCATGTCCAAACACG TCGAGGAGCTTTAA
AA sequence Show only first row Show all	>Lus10043192 pacid=23168285 polypeptide=Lus10043192 locus=Lus10043192.g ID=Lus10043192.BGIv1.0 annot-version=v1.0 MAAITDDDLQKYSSQHTEFFVVANLVGSAFSLLPLLYLVKRRTRSLYIPPPQHYAFFLFFHDSVITAILLAGCSAATAIGLVAENGVASSGWMPICNRFH RFCNVGAVSLALSYSSFLSFFILTILSAAMSKHVEEL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G25040			Uncharacterised protein family...		Lus10043192 [exp]	0	1
AT5G16100			unknown protein		Lus10004035 [exp]	2.4	0.6637
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030461 [exp]	8.7	0.6058
AT4G27300			S-locus lectin protein kinase ...		Lus10037865 [exp]	10.1	0.6057
					Lus10028008 [exp]	12.5	0.5493
AT4G17905		ATL4H	RING/U-box superfamily protein...		Lus10024405 [exp]	13.0	0.5887
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10016224 [exp]	18.7	0.5975
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Lus10012699 [exp]	34.8	0.5289
AT1G05820		ATSPPL5	ARABIDOPSIS THALIANA SIGNAL PE...		Lus10001154 [exp]	34.9	0.5906
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10029332 [exp]	35.1	0.5788
AT4G30590		AtENODL12	early nodulin-like protein 12 ...		Lus10019955 [exp]	37.5	0.5232

Compare expression of checked genes

Lus10043192 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.