Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48820 686 / 0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) AT1G08660 367 / 2e-123 MGP2 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) AT1G08280 52 / 6e-07 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032547 [exp] 852 / 0 AT3G48820 692 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Lus10031992 [exp] 376 / 5e-127 AT1G08660 743 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10035162 [exp] 371 / 7e-125 AT1G08660 742 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Lus10019538 [exp] 55 / 8e-08 AT1G08280 454 / 2e-159 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Lus10043382 [exp] 52 / 4e-07 AT1G08280 186 / 7e-57 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G104100 [exp] 701 / 0 AT3G48820 730 / 0.0 Glycosyltransferase family 29 (sialyltransferase) family protein (.1), Glycosyltransferase family 29 (sialyltransferase) family protein (.2) Potri.014G145400 [exp] 350 / 1e-116 AT1G08660 776 / 0.0 MALE GAMETOPHYTE DEFECTIVE 2 (.1.2) Potri.009G144000 [exp] 55 / 5e-08 AT1G08280 416 / 9e-145 Glycosyltransferase family 29 (sialyltransferase) family protein (.1) Potri.004G184200 [exp] 54 / 1e-07 AT1G08280 467 / 1e-164 Glycosyltransferase family 29 (sialyltransferase) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00777 [flax] [poplar] Glyco_transf_29 Glycosyltransferase family 29 (sialyltransferase)
Representative CDS sequence Show only first row Show all	>Lus10043193 pacid=23168196 polypeptide=Lus10043193 locus=Lus10043193.g ID=Lus10043193.BGIv1.0 annot-version=v1.0 ATGAGGATCCTGAAGTTCGGATTCTTGCTCGCTTTGGCATCTGGACTCTCCGCCATTCTCATCTACATCAACGGCGTCACCAATTTCGATGGGATCCAGA GATTGTCCAGTGAAGAAGTCGAAGCTTTGCAATCTCTACAATCCAGTTTCAGGAAGTGCGTGAAAGCCAATGGATTAGGTCTTGAGGCTTTTCCAGGGAA TGATTATTGCTCGGTCTCCATTAATTTCCCAAGCGACACTGACTCTAAATGGATAGATCCTAAAACAGGAGAACGAGAAGGTTTATCTTTCGAATTCAAT CTATGTGAAGCAGTGGCGAACTGGGAGCAGGTTAAGAACAGTACTACTATACTTACTAAGGAATTCATAGATGCACTTCCCAATGGATGGAAGGACTATG CCTGGCGTCGGATCAATAAAGGAATTCAGCTTAACCGATGTCAGAACAAAACGTTGTGTATGGAGAAGCTCAAACTTGTATTGCCTGAAACACCACCTTA TGTTCCAAAACAGTTCGGCCGGTGTGCTGTTATTGGTAATTCAGGTGATCTTTTGAAAAGTAGGTTTGGCAAAGAAATTGATGGTTATGATGTTGTCATA AGAGAAAATGGTGCTCCTATTCAGAACTACACGGAATATGTGGGCAAGAAAAGTTCCTTCCGCCTACTGAACAGGGGTTCTGCAAAGGCTCTTGATAAAG TTGTGGAGTTAGATGAGTCAAGGAAGGAGGTGCTGATCGTCAAAACGACAATACATGACATTATGAACCAAATGATCCAGGAAATTCCAATAAGAAATCC TGTCTACCTTATGTTAGGTGCATCGTTTGGGTCAGCAGCAAAAGGAACTGGGCTGAAAGCACTCGAGTTTGCTCTATCTATGTGCCAGTCGGTTGATATG TATGGTTTCACTGTAGATCCGGGATACAAAGAATGGACTAGATACTTCTCGGAATCTCGAAAGGGTCACACTCCTCTCCACGGGAGAGCTTACTACCAAA TGATGGAGTGTCTGGGTCTGATCAAGATTCATTCTCCTTTGCGAGCTGATCCTAACCGTGTCGTGAAATGGGTTCCGAGCAAGAGTACTATAGCCGCTGC TACAGCTGGATCAGAGAAACTATTGAGGAGGGTCGGAGCAGGGTATACAGACCCACTGCGGGCGTGTGAAATAAAGAAGCAGGTTAAAAGGAAGCTGAAA CCTGTTCCAAGCAAGAGGAAAGTTGCTCTTGATCATCAAAAGTCCTTGAAAGGCGCAACATTGTATGCTTTGGAACACAATCCTGGACATGGTATGCTCT GTACATTCCCAACAGATTGA
AA sequence Show only first row Show all	>Lus10043193 pacid=23168196 polypeptide=Lus10043193 locus=Lus10043193.g ID=Lus10043193.BGIv1.0 annot-version=v1.0 MRILKFGFLLALASGLSAILIYINGVTNFDGIQRLSSEEVEALQSLQSSFRKCVKANGLGLEAFPGNDYCSVSINFPSDTDSKWIDPKTGEREGLSFEFN LCEAVANWEQVKNSTTILTKEFIDALPNGWKDYAWRRINKGIQLNRCQNKTLCMEKLKLVLPETPPYVPKQFGRCAVIGNSGDLLKSRFGKEIDGYDVVI RENGAPIQNYTEYVGKKSSFRLLNRGSAKALDKVVELDESRKEVLIVKTTIHDIMNQMIQEIPIRNPVYLMLGASFGSAAKGTGLKALEFALSMCQSVDM YGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMECLGLIKIHSPLRADPNRVVKWVPSKSTIAAATAGSEKLLRRVGAGYTDPLRACEIKKQVKRKLK PVPSKRKVALDHQKSLKGATLYALEHNPGHGMLCTFPTD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48820			Glycosyltransferase family 29 ...		Lus10043193 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10026190 [exp]	3.7	0.8197
AT5G39940			FAD/NAD(P)-binding oxidoreduct...		Lus10001121 [exp]	4.1	0.8216
AT1G62640		KAS III, KASIII	3-ketoacyl-acyl carrier protei...		Lus10028925 [exp]	9.4	0.8130
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10014222 [exp]	15.0	0.7954
AT3G07170			Sterile alpha motif (SAM) doma...		Lus10025917 [exp]	16.6	0.8093
AT1G56050			GTP-binding protein-related (....		Lus10031209 [exp]	19.7	0.8177
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	21.1	0.8089
AT5G25080			Sas10/Utp3/C1D family (.1)		Lus10026882 [exp]	21.9	0.7828
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	25.6	0.7809
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017472 [exp]	26.3	0.7617

Compare expression of checked genes

Lus10043193 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.