Plant FIBer expression Database

Lus10043194 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G48860 576 / 0 unknown protein
AT5G23700 505 / 1e-174 unknown protein
AT5G13260 430 / 2e-145 unknown protein
AT4G25070 420 / 6e-139 unknown protein
AT4G08630 304 / 2e-93 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032546
[exp]
842 / 0 AT3G48860 595 / 0.0 unknown protein
Lus10036015
[exp]
765 / 0 AT3G48860 675 / 0.0 unknown protein
Lus10016721
[exp]
764 / 0 AT3G48860 674 / 0.0 unknown protein
Lus10001801
[exp]
472 / 7e-162 AT5G13260 591 / 0.0 unknown protein
Lus10002574
[exp]
447 / 1e-151 AT5G13260 566 / 0.0 unknown protein
Lus10001720
[exp]
309 / 3e-96 AT4G08630 471 / 5e-155 unknown protein
Lus10004138
[exp]
288 / 4e-88 AT4G08630 464 / 2e-152 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G105400
[exp]
651 / 0 AT3G48860 546 / 0.0 unknown protein
Potri.015G104600
[exp]
581 / 0 AT3G48860 452 / 3e-153 unknown protein
Potri.003G164100
[exp]
531 / 0 AT5G13260 529 / 0.0 unknown protein
Potri.001G065800
[exp]
528 / 0 AT3G48860 528 / 0.0 unknown protein
Potri.005G044600
[exp]
394 / 2e-129 AT4G08630 436 / 5e-142 unknown protein
PFAM info
Representative CDS sequence
>Lus10043194 pacid=23168280 polypeptide=Lus10043194 locus=Lus10043194.g ID=Lus10043194.BGIv1.0 annot-version=v1.0
ATGGATCGGAGGAGGGCTGGAAGTCCGGTATATGGGCGGCAGTGGAGTGGTGGATCTAGCAGCACGGGAACTTCCTCCCCGATGATGTCCCCGGCGCATC
CGAGCTCCAGGCTGGGTGGAGGTATGTCTACGATCAAGCGAACTCAGAATGTAGCCGCCAAGGCAGCTGCTCAGCGGCTAGCTCAAGTCATGGCATCGCA
GACCGCCGATGATGACGATGACGACGATGATCTAGGGTTTAGATTCAGTAATCAGGCAGCTCCTCCTACTTCATCTTTTGGTAGCAGTGCTAATCAGAAC
GGGAGGAGCAGTGCTACTCCTGCCATTTCATTCACTAGAGGGAACAGATCTCCGTCACCTGCGTTAGGTCGAAACTTTGCAGAGCAAGTTACTCAGCCTC
GATCCTCATCAACAGGACGGGCCACCATGTCTGTTCGAACTTCTCTGATGGCGTCTAGTAAGTCAACTTTAAGGACTCCCATGCCTATACCTGCCATAGA
TCCTCCAGCCATCAAGAGCCGAGATAAAAGGTTTACCCCGGATGTGCGGCAATTTGAGAAAGACAATGGAGATCAGCGTGAAGCATCTGCTATTCGTGAT
GAACTTGATATGCTACAAGAGGAAAACGAGGTCATGCTTGACAAGCTGCGGCGGGCAGAAGAAAGACGTGAGCAAGCAGAGGCCAGGGCTAAAGAACTTG
AGAAACAGGTAGCTGCTCTTGGCGAAGGTGTTTCCCTTGAAGCTAAACTCTTAAGCAGGAAAGAAGCAGCATTACGTCAAAGAGAGGCTGCCCTAAAGGC
GGCAAAGCAAACGAAAGATGGGAGGGATGAGGAAGTCGTGTCTCTTCGTACAGAGCTTGAGACTCTAAAGGATGAGACGGCAACAGCTGTGGAGCAGCTG
CGAGAATCAGAAAGTGAAGCCAAAGCACTTCGTACCATGACACAGAGAATGATTTTGACTCAAGAAGAGATGGAGGAAGTAGTTCTAAAGCGATGTTGGC
TTGCTCGATACTGGGGTCTGGCTGTGCAACAAGGCATTGCCGCTGACATAGCAACGTCAAAGCATGAACATTGGTCTGCTTTAGCTCCCCTTCCATTTGA
GATCGTCATTTCCGCTGGACAGAAGGCAAAGGAAGAAACTTGGGACAAAGCTGGCAGTGATTCAGATAGGAGTAAACCTGCTCGTGATTTGAGTGATTTA
ACAGGAGAAGGAAACATTGAGAGTATGCTTTCGGTGGAAATGGGACTGAGAGAATTAGCATCTTTGAAGGTTGAGGATGCTATTGTGCTTGCATTGGCTG
AGCACAGACGAGCATATTTAAAATCTCTTGGTGAACCCAAGTATCCTGAAGCCTTTGAGTTAAGCGAAGCACAGACAGAAGATGTTCTTTTCAAGGAGGC
ATGGCTGACGTATTACTGGAGAAGAGCCAAGGTGCATGGCGTGGAAGAGGATATTGCAGAAGAGCGTCTTCAGGTTTGGATTAGCCGGAGTGGGAAGGCA
CCAACCTCACAGGACGCTATAGATGTGGAGCGAGGGTTGGTGGAGCTAAGGAAGTTGAGCATAGAACAACAACTTTGGGAAGCATCGAGGAAAGAAATTG
ATCTTCAGCCTTCACCTGGTAATCATAAATCGCCCACGGATTCCGATCTCTCGTCGTAA
AA sequence
>Lus10043194 pacid=23168280 polypeptide=Lus10043194 locus=Lus10043194.g ID=Lus10043194.BGIv1.0 annot-version=v1.0
MDRRRAGSPVYGRQWSGGSSSTGTSSPMMSPAHPSSRLGGGMSTIKRTQNVAAKAAAQRLAQVMASQTADDDDDDDDLGFRFSNQAAPPTSSFGSSANQN
GRSSATPAISFTRGNRSPSPALGRNFAEQVTQPRSSSTGRATMSVRTSLMASSKSTLRTPMPIPAIDPPAIKSRDKRFTPDVRQFEKDNGDQREASAIRD
ELDMLQEENEVMLDKLRRAEERREQAEARAKELEKQVAALGEGVSLEAKLLSRKEAALRQREAALKAAKQTKDGRDEEVVSLRTELETLKDETATAVEQL
RESESEAKALRTMTQRMILTQEEMEEVVLKRCWLARYWGLAVQQGIAADIATSKHEHWSALAPLPFEIVISAGQKAKEETWDKAGSDSDRSKPARDLSDL
TGEGNIESMLSVEMGLRELASLKVEDAIVLALAEHRRAYLKSLGEPKYPEAFELSEAQTEDVLFKEAWLTYYWRRAKVHGVEEDIAEERLQVWISRSGKA
PTSQDAIDVERGLVELRKLSIEQQLWEASRKEIDLQPSPGNHKSPTDSDLSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G48860 unknown protein Lus10043194
[exp]
0 1
AT5G18480 PGSIP6 plant glycogenin-like starch i... Lus10000817
[exp]
1.4 0.8673
AT3G04240 SEC secret agent, Tetratricopeptid... Lus10007957
[exp]
2.0 0.8464
AT4G02570 AXR6, ATCUL1 AUXIN RESISTANT 6, cullin 1 (.... Lus10028917
[exp]
5.7 0.8200
AT5G49830 EXO84B exocyst complex component 84B ... Lus10037332
[exp]
6.5 0.8373
AT4G16150 CAMTA calmodulin binding;transcripti... Lus10036455
[exp]
11.2 0.8224
AT4G26410 Uncharacterised conserved prot... Lus10007935
[exp]
12.1 0.7608
AT5G66180 S-adenosyl-L-methionine-depend... Lus10028444
[exp]
14.3 0.8196
AT3G46220 unknown protein Lus10004920
[exp]
15.6 0.8091
AT5G22030 UBP8 ubiquitin-specific protease 8 ... Lus10013599
[exp]
15.7 0.8232
AT1G29400 AML5 MEI2-like protein 5 (.1.2) Lus10004591
[exp]
21.2 0.8298

Lus10043194 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.