Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23720 978 / 0 PHS1 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) AT3G23610 111 / 1e-27 DSPTP1 dual specificity protein phosphatase 1 (.1.2.3) AT3G06110 85 / 7e-19 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3) AT3G55270 85 / 1e-16 MKP1, ATMKP1 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) AT2G04550 59 / 3e-09 DSPTP1E, IBR5 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) AT5G56610 49 / 5e-06 Phosphotyrosine protein phosphatases superfamily protein (.1.2) AT2G35680 45 / 0.0001 Phosphotyrosine protein phosphatases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032545 [exp] 1621 / 0 AT5G23720 1120 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Lus10021940 [exp] 99 / 1e-23 AT3G23610 248 / 1e-84 dual specificity protein phosphatase 1 (.1.2.3) Lus10034033 [exp] 85 / 3e-19 AT3G23610 168 / 5e-54 dual specificity protein phosphatase 1 (.1.2.3) Lus10041227 [exp] 85 / 2e-18 AT3G23610 237 / 4e-80 dual specificity protein phosphatase 1 (.1.2.3) Lus10006229 [exp] 85 / 1e-16 AT3G23610 512 / 1e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10036877 [exp] 85 / 2e-16 AT3G23610 511 / 3e-171 dual specificity protein phosphatase 1 (.1.2.3) Lus10030324 [exp] 82 / 1e-15 AT3G55270 806 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10003291 [exp] 82 / 2e-15 AT3G55270 800 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Lus10002263 [exp] 61 / 1e-09 AT2G04550 327 / 1e-113 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105000 [exp] 1145 / 0 AT5G23720 1096 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.012G105800 [exp] 1093 / 0 AT5G23720 1006 / 0.0 PROPYZAMIDE-HYPERSENSITIVE 1, dual specificity protein phosphatase family protein (.1.2.3) Potri.010G033000 [exp] 94 / 1e-21 AT3G23610 249 / 4e-85 dual specificity protein phosphatase 1 (.1.2.3) Potri.010G210900 [exp] 88 / 1e-17 AT3G55270 715 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.008G049900 [exp] 87 / 2e-17 AT3G55270 710 / 0.0 ARABIDOPSIS MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE 1, mitogen-activated protein kinase phosphatase 1 (.1) Potri.014G160500 [exp] 61 / 1e-09 AT2G04550 333 / 6e-116 DUAL SPECIFICITY PROTEIN PHOSPHATASE 1E, indole-3-butyric acid response 5 (.1.3) Potri.006G040300 [exp] 60 / 4e-09 AT4G18593 148 / 5e-44 dual specificity protein phosphatase-related (.1) Potri.016G035700 [exp] 60 / 4e-09 AT4G18593 149 / 3e-44 dual specificity protein phosphatase-related (.1) Potri.014G045500 [exp] 47 / 4e-05 AT2G35680 360 / 2e-124 Phosphotyrosine protein phosphatases superfamily protein (.1) Potri.002G136700 [exp] 44 / 0.0004 AT2G35680 350 / 1e-120 Phosphotyrosine protein phosphatases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain CL0016 [flax] [poplar] PKinase PF09192 [flax] [poplar] Act-Frag_cataly Actin-fragmin kinase, catalytic
Representative CDS sequence Show only first row Show all	>Lus10043195 pacid=23168084 polypeptide=Lus10043195 locus=Lus10043195.g ID=Lus10043195.BGIv1.0 annot-version=v1.0 ATGCTGCAGGAGAAAGAAGAAGAGGAAGAAGAAGAAGAAGAGAGGGAGTTGGAGTTGGGATCCGACGAGCCACAGACTCCTTTACCTCTCACTGTTACAT CCCGGGTCCTGCTTATCGTTTCACGCAATGGCTGGGGTTGGTCCGTAAAAGAAGCGGCGGGCATTCACAAGGTTTCCATTTTCAGTGCAGGAGAAGAAGC ACCCTCTGACAACCCAATAACCGATCCACCTCGTGAGCAAGTTCCGGAGATTAGTTTGTGGGATAGGCTTGGTAATGCTGCCATGTTGGACATAGACTCC ACTTCTTTTGCCTGGGACATGCTTTCTTCACTCCATCATAATGAGCACAGCAGTAGCAATGAACAAGCTGAGGACGAAATGACTAAGGCCCTCGAGGTTA CTGTAAATTCTGGAGGAGTTGTCTTCTTTGCCTTATTCAACCAGCCTCAAACCAGTGATGTGTTCCCAAGAGAAGCAGCAGCAGTGATCAAGTTTTCATC TTCAAGGATGGCCACACAATCAGAACGCCTTGGCTATGAATTTTCAAGATGGTTAGGTGTACGGAGTCCGCAGGCTAGGGTGATTCACAACTTCAGCCCC GAATGGCTCCAGATTAAGGAAGCTGCAGAAAAAGCAAAGGCTGCTGCAGTTTCAGAGGGAGATGAAGTTGGTGACACATGTTCAGAACTCTTGGAAGCTC TAGAACTAAGTCGATGTCTATTTCTGATGAGTTATGTTCATGGATCTCCTCTACTGGAAAGCTCCAATGCATTTGAGTCTCCTGAATATGCAGAAAAAAC TGCGGCAGCACTTGGTAGGGTGTTGATGTTGGATCTCATAATCCGCAATGAAGATAGACTTCCCTGTCGTGATTTGAGATGGCGTGGAAATTCGGCAAAC TTGCTGTTGGCAGATAAAGTGACTTCCACAAATTTGGATGAAATGGGGGATTTTTACGATTCTGCAATCAGGAAACTACAACCAAGAATGGCTAGAGCTC TTCAAAGTGATAGGAGGAAAAGCTCAGTGGATATCAAAGTTGATTCCCACAACCGAAGAATGTCACAAGGATCTGATCTTTCTGATCTAATAGAATCACA AAAAACTAGCAGCCAATCCCTGGTAAGACAAGCTTCTGAAGATTCGGTTCTATCTGATCTTTCAAGTTTTCATATCGTGGCTATAGATTCTGGTGTTCCT CGAAGACCTCCTGCTGGAAAACGTGCAAATGATCACGAAAGCTATCCTAAATTGGTGGAGTTACTTCTAAACAGTCCAGACTATGCCTCAAACTTGTTGC ATGACATAACTTGTGGAAAATTAGGTTCTCCATCTGAAGACGATGACAACAATAGTCGGAATCTTATGAATCCGGATTCATCAGTCAAGTACTTCCGTGG TGGGTTTCGTGGTGCTCTCAGAGATCTCCAAGGATTCCATATATTCCTTCTCACACTTCACCAGAAGCTGGATGGCTTACTGCGAACATTCCTGAGCATT ACAAGCAAAACAAATTCAGGAGACTCGGATAGAGAGGATTTTACGACTCTAGAGTCACCTCGTGTTCGTTGCCCTTCACCACCAAGCAAGGACAAGTTTT TCAATGATAACCATTCAGATCTCATCGACTCACCTGCTCCAAAGTCAGCACCTTCAGGAAATAGAGATACACCTGACACTAGTTCTCCCCTTTTAAAAGA GAATTGGCACGGGAGGTTGTCGAAGGGAGGTGGAGACCAGCTTCGTAGCTTCCGCTTAACAACAAAGCTTCGCGACCTCCAAAAGTTTGCCAAGTGTGAC ATGGAATCAAATAAAGATCTCGAACAGTGGAATGAGATGCTCAGAAATGATGTTATCAAGCTGTGTCAGGAGAACAATTTTAACACCGGGTTTTTCGAAG GAAGTGATAGTAATGGTATCGTCGATGCCTATGAGTTGAAGGTAAGACTCGAGCACATCCTCGAGAGGATATCACTAATATCTGATGCCGCAAACACTGA GAAACCATCATCAATTACGAGCTGTCTATTTATCGGCGGAGCTCTGGCTGCTAGGTCTCTTTACACTTTGCAATACCTGGGAATCACTCATATACTATGT CTTTGTGCCAATGAGATTGGTCAGTCGGATTCTCAGCGTCAAGATCTATTCGAGTACAAGAACTATTCTATATGTGACAGAGAAGATTCAAATATCAGCA GCATCTTTGATGATGCCTCTGACTACATCCATCATGTCGAGTCAACTGGTGGGAAAGTTCTAGTTCACTGTTTCGAAGGCAAAAGTAGGAGTGCAACCGT AGTTCTGGCCTATTTGATGCTCAGAAAAAACTTCACACTTGCACAGGCATGGAACAACCTAAGGCGAGTCCACCGGAGAGCACAACCGAACGATGGGTTT GCAAGGGTGTTGCTGGAGCTCGACAAGAAATTGCATGGCAAAGTCTCGATGGAGTGGCAACAACGGAAACCCATGATGAAAGTATGTCCCATATGCGGGA AGAATGCTGGTCTAAGCAGCAGTTCACTGAAGCTCCATCTGCAAAAATCACATAAGAAGATCTCGTCAGGGAGTGTGGATAGCGCCATGACCATGGAAAT CGAGAAGGCCTTGGAAGCACTGAGATTAACCAGAAGTGGCAGTGCCAGCCCTACGCCAACGCAGTCGTCCATGGCTGATATGGATGAGTAG
AA sequence Show only first row Show all	>Lus10043195 pacid=23168084 polypeptide=Lus10043195 locus=Lus10043195.g ID=Lus10043195.BGIv1.0 annot-version=v1.0 MLQEKEEEEEEEEERELELGSDEPQTPLPLTVTSRVLLIVSRNGWGWSVKEAAGIHKVSIFSAGEEAPSDNPITDPPREQVPEISLWDRLGNAAMLDIDS TSFAWDMLSSLHHNEHSSSNEQAEDEMTKALEVTVNSGGVVFFALFNQPQTSDVFPREAAAVIKFSSSRMATQSERLGYEFSRWLGVRSPQARVIHNFSP EWLQIKEAAEKAKAAAVSEGDEVGDTCSELLEALELSRCLFLMSYVHGSPLLESSNAFESPEYAEKTAAALGRVLMLDLIIRNEDRLPCRDLRWRGNSAN LLLADKVTSTNLDEMGDFYDSAIRKLQPRMARALQSDRRKSSVDIKVDSHNRRMSQGSDLSDLIESQKTSSQSLVRQASEDSVLSDLSSFHIVAIDSGVP RRPPAGKRANDHESYPKLVELLLNSPDYASNLLHDITCGKLGSPSEDDDNNSRNLMNPDSSVKYFRGGFRGALRDLQGFHIFLLTLHQKLDGLLRTFLSI TSKTNSGDSDREDFTTLESPRVRCPSPPSKDKFFNDNHSDLIDSPAPKSAPSGNRDTPDTSSPLLKENWHGRLSKGGGDQLRSFRLTTKLRDLQKFAKCD MESNKDLEQWNEMLRNDVIKLCQENNFNTGFFEGSDSNGIVDAYELKVRLEHILERISLISDAANTEKPSSITSCLFIGGALAARSLYTLQYLGITHILC LCANEIGQSDSQRQDLFEYKNYSICDREDSNISSIFDDASDYIHHVESTGGKVLVHCFEGKSRSATVVLAYLMLRKNFTLAQAWNNLRRVHRRAQPNDGF ARVLLELDKKLHGKVSMEWQQRKPMMKVCPICGKNAGLSSSSLKLHLQKSHKKISSGSVDSAMTMEIEKALEALRLTRSGSASPTPTQSSMADMDE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10043195 [exp]	0	1
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10012053 [exp]	2.4	0.7881
AT1G23880			NHL domain-containing protein ...		Lus10039421 [exp]	4.5	0.8221
AT5G50180			Protein kinase superfamily pro...		Lus10032086 [exp]	7.5	0.7031
AT3G14460			LRR and NB-ARC domains-contain...		Lus10039509 [exp]	7.6	0.7947
AT1G27660	bHLH	bHLH110	basic helix-loop-helix (bHLH) ...		Lus10033198 [exp]	13.0	0.7469
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Lus10041365 [exp]	18.2	0.7649
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Lus10033957 [exp]	18.9	0.7594
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10001924 [exp]	20.2	0.7549
AT2G40570			initiator tRNA phosphoribosyl ...		Lus10012958 [exp]	21.2	0.6863
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Lus10042478 [exp]	21.4	0.7566

Compare expression of checked genes

Lus10043195 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.