Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 295 / 3e-95 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 272 / 1e-86 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G51070 148 / 9e-42 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT2G25140 107 / 2e-27 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 99 / 3e-24 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 81 / 5e-18 HOT1, ATHSP101 heat shock protein 101 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032544 [exp] 340 / 1e-114 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 311 / 2e-101 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 311 / 3e-101 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032514 [exp] 159 / 2e-45 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043013 [exp] 157 / 6e-45 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10038272 [exp] 112 / 2e-29 AT2G19740 200 / 9e-63 Ribosomal protein L31e family protein (.1) Lus10030705 [exp] 108 / 8e-28 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10013191 [exp] 108 / 2e-27 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 107 / 3e-27 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105100 [exp] 302 / 6e-98 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 298 / 3e-96 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.005G197400 [exp] 154 / 5e-45 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G110000 [exp] 147 / 3e-41 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G112000 [exp] 146 / 6e-41 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.006G262700 [exp] 109 / 4e-28 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.017G090600 [exp] 100 / 1e-24 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.004G124800 [exp] 98 / 4e-24 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G056900 [exp] 88 / 1e-20 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.015G057000 [exp] 88 / 1e-20 AT1G74310 1567 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10043196 pacid=23168290 polypeptide=Lus10043196 locus=Lus10043196.g ID=Lus10043196.BGIv1.0 annot-version=v1.0 ATGACTTCGAACGTTGGGAGCAATGTTATTGAGAAGGGAGGAAAGAGAATAGGGTTCGACCTCGACTATGACGAGAAGGACAGCAGTTACAACAGGATCA AGAGCCTGGTTACGGAGGAACTGAAGCAGTATTTCAGGCCGGAGTTCTTGAACAGATTGGATGAGATGATCGTGTTCAGACAGCTGACGAAACTGGAGGT GAAGGAAATTGCCGATATAATGTTGGCAGAGGTTTTCGATAGGTTGAAGAAGAAGGAGATTGAGCTTCAAGTGACGGAGAGGTTTAGGGAGAGAGTTGTG AACGAAGGGTACAATCCGAGTTATGGAGCGAGGCCTCTGAGGAGAGCGATCATGAGACTTCTGGAGGATAGCATGGCTGAGAAAATGCTTGGAGGGGAGA TCAAAGAAGGTGACTCGGTCATCGTGGATATTGATTCTGATGGCAAGGTCATAGTTCTCAATAGCGGTAGTGGCGCCCCTGATTCCCTACCAGATGCTCT GTCTGTTGCATAG
AA sequence Show only first row Show all	>Lus10043196 pacid=23168290 polypeptide=Lus10043196 locus=Lus10043196.g ID=Lus10043196.BGIv1.0 annot-version=v1.0 MTSNVGSNVIEKGGKRIGFDLDYDEKDSSYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLAEVFDRLKKKEIELQVTERFRERVV NEGYNPSYGARPLRRAIMRLLEDSMAEKMLGGEIKEGDSVIVDIDSDGKVIVLNSGSGAPDSLPDALSVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043196 [exp]	0	1
AT2G22360			DNAJ heat shock family protein...		Lus10025742 [exp]	1.0	0.8807
AT5G52010	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10018728 [exp]	2.0	0.8792
AT4G10000			Thioredoxin family protein (.1...		Lus10001283 [exp]	3.5	0.8557
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10023517 [exp]	4.5	0.8311
AT1G27060			Regulator of chromosome conden...		Lus10036707 [exp]	7.9	0.7530
AT3G47390		PHS1	PHOTOSENSITIVE 1, cytidine/deo...		Lus10041104 [exp]	10.2	0.7309
AT4G01940		ATCNFU1, NFU1	NFU domain protein 1 (.1)		Lus10009999 [exp]	10.2	0.7864
AT1G76570			Chlorophyll A-B binding family...		Lus10015235 [exp]	11.5	0.8180
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Lus10007945 [exp]	12.4	0.7800
AT1G69550			disease resistance protein (TI...		Lus10005807 [exp]	14.3	0.7701

Compare expression of checked genes

Lus10043196 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.