Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 229 / 9e-70 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 226 / 1e-68 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT3G45450 137 / 7e-39 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT1G21470 57 / 2e-10 unknown protein AT5G51070 56 / 4e-09 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032543 [exp] 376 / 5e-134 AT5G50920 265 / 9e-83 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10036017 [exp] 267 / 1e-83 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 256 / 1e-79 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043014 [exp] 53 / 7e-08 AT5G51070 664 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043013 [exp] 50 / 6e-07 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 49 / 2e-06 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 267 / 9e-84 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 263 / 4e-82 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G112000 [exp] 64 / 7e-12 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 60 / 2e-10 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component
Representative CDS sequence Show only first row Show all	>Lus10043198 pacid=23167908 polypeptide=Lus10043198 locus=Lus10043198.g ID=Lus10043198.BGIv1.0 annot-version=v1.0 ATGGCGAGATTTCTAGTTCATTCCACCATTGCCCCTTCCCTGGCTCCTCCTGCTAAGGGAATCCGGCCTCAAGGATCCGAAAACTCGAAAAGGACTGTTG TCAAGGCGATGGCAAGTTTACAAGCACCCTTGAGGGGTTACTCTGGGTTGCGGAGTTCAACCTCTTTCGGTACATGGCAAGCTTTTGGTTCAAGGCTTGC TATCTCTACCTTTCCTAGGCAGAGGAGAGCTAAAAGATTTGTAGCTAAAGCTATGTTTGAGCGGTTCACAGAAAAAGCTATCAAAGTTATCATGCTTGCT CAAGAGGAGGCTAGACGTCTTGGCCACAACTTTGTTGGCACTGAGCAAATCCTTTTGGGTCTTATCGGCGAGGGAACTGGCATTGCTGCTAAGGTCCTCA AATCTATGGGTATCAATCTTAAGGACGCTCGTGTAGAAGTCGAAAAGATCATTGGACGAGGCAGTGGATTTGTAGCTGTGGAAATCCCATTCACTCCTCG AGCTAAGCGCGTTCTAGAATTGTCGCTTGAAGAAGCTCGCCAACTCGGTCACAACTACATCGGATCTGAGCACTTGCTCTTGGGGCTGCTCCGTGAAGGT GAGGGTGTTGCGGCCCGTGTTCTTGAGAATTTGGGTGCTGATCCTAGTAATATAAGAACACAGGCAAGTTCTAAACTCTTTTAA
AA sequence Show only first row Show all	>Lus10043198 pacid=23167908 polypeptide=Lus10043198 locus=Lus10043198.g ID=Lus10043198.BGIv1.0 annot-version=v1.0 MARFLVHSTIAPSLAPPAKGIRPQGSENSKRTVVKAMASLQAPLRGYSGLRSSTSFGTWQAFGSRLAISTFPRQRRAKRFVAKAMFERFTEKAIKVIMLA QEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREG EGVAARVLENLGADPSNIRTQASSKLF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	0	1
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10032543 [exp]	1.0	0.9491
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10030259 [exp]	2.8	0.9173
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	3.5	0.9136
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10004009 [exp]	6.7	0.8923
AT5G42390		SPP	stromal processing peptidase, ...		Lus10041263 [exp]	6.9	0.8728
ATCG01280		ATCG01280.1, YC...	Chloroplast Ycf2;ATPase, AAA t...		Lus10004897 [exp]	8.5	0.8973
AT5G42390		SPP	stromal processing peptidase, ...		Lus10021970 [exp]	9.5	0.8916
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Lus10003675 [exp]	9.7	0.8980
AT5G40390		RS5, SIP1	seed imbibition 1-like, raffin...		Lus10022241 [exp]	11.5	0.8241
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10042232 [exp]	11.8	0.8950

Compare expression of checked genes

Lus10043198 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.