Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26744 299 / 3e-95 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT1G12860 284 / 3e-90 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G65640 124 / 3e-31 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 113 / 9e-28 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G16910 114 / 1e-26 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 76 / 3e-14 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G29930 71 / 1e-13 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G17880 72 / 3e-13 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 69 / 3e-12 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 69 / 3e-12 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032542 [exp] 738 / 0 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10039631 [exp] 110 / 6e-27 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 105 / 3e-25 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2) Lus10042572 [exp] 78 / 1e-16 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 71 / 4e-14 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10018395 [exp] 71 / 1e-13 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004575 [exp] 73 / 3e-13 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 72 / 5e-13 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10030970 [exp] 72 / 5e-13 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106000 [exp] 385 / 3e-128 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.015G105200 [exp] 381 / 2e-126 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.002G108400 [exp] 132 / 4e-34 AT5G65640 233 / 2e-74 beta HLH protein 93 (.1.2) Potri.009G136300 [exp] 106 / 5e-24 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 86 / 2e-17 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 81 / 9e-16 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G208600 [exp] 79 / 2e-15 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.018G141800 [exp] 76 / 3e-15 AT5G57150 256 / 6e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.010G041500 [exp] 74 / 6e-15 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G083500 [exp] 76 / 3e-14 AT4G00870 218 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10043199 pacid=23168284 polypeptide=Lus10043199 locus=Lus10043199.g ID=Lus10043199.BGIv1.0 annot-version=v1.0 ATGATGGATGACAACATCAACAACAAAAACAAGGATGATGCAGCAGCTTCAGGAGGACTCAACAATGGCGACAAATTAAACCACAACATCATCCTCCAAA ACATGGGTTACAAATCCATGCTTCAACAAGAGGAAGAAGAAGGAGGTGAAGAATCTGAGTGGTACGTCCCAAACAAAGAAATGAACTTTGCCACCTCAAA CCTGGTTGCGGACCCTGATGGTTTGCTGCTCCACCACACAGTGGATCATTCCTCCTCATCTTGCTCCCCTTCCGCCTCCTCCGTCTTCAACAACTTGGTC GCCGACCCTAATTCTCAAGTTCACTACTTTATGCAACAACCCAAACCGACGTCGTCTTCTTCCTTCCTCAATGCTATGAACCCTTTGGATCCTGGGTTCG ATTTTGGCTTCCTCGACAACCAACTTGCTACAAATTACTCGACTTTGCTGAACAAGCCAAACGGCGGGATGATGTTTGGTGCTGATAATTGTGGCGGTTC AGGTCATCAGATAGGTGCTCACAATTTTTGCAGCCCAAACCCTCAATTTCAGTCTAACAACAACAGCATGCTTCAAGTACTGCCTGAAACTGGCGGTGGT GAGTTTAGAGGATTTGAAGAAGGGAATGCAAATGGAAATAATGGGTTGTTGTTCATGAATAGGTCTAATAAGCTGTTGAGGCCACTTGAGAGTTATCCTT CTGTGGGTGAGCAGCCCACCTTGTTTCAGAAAAGGGCGGCCTTGAGGAAGAATTTGGGGAATAACAACGGGAAGAAGGAAATGGTTGAAATGGAAGAGTT CAGTGAGAAGAAGAGGGTTTTGTTGAGTCATGGTGGTGGTTGTGGTGGAGGTGATTCGTTTCTGGATGATTTGAGCATTGATGGGTCAGGGCTGAACTAC GACTCTGATGAGCTTGGTGACGATACTACTAAGTTGGATGAGATTTGCAAGGCTGGAGGATTTAGCAGCTCAAATGCAAACAGTGCTAGTACTGGTGTTA CGGATCAGAAAGGAGGAGGGAAGAAGAAGGGGCTTCCTGCTAAGAACCTGATGGCGGAAAGGAGGCGTCGTAAGAAGCTGAATGATCGACTCTACATGCT CAGATCTGTCGTACCAAGAATCAGCAAAATGGACAGAGCATCGATACTGGGGGATGCAATAGAATACTTGAAGGAGCTTCTGCAAAGGATCAACGACCTT CATAACGAACTGGAATCAACTCCACCAGGGTCTTCTTCCTTGACACCTACAGCTGGTGCTACAAGCTTCCATCCTCTGACACCAACCCCATCAGCACTCT CCTCCCATATCAAAGACAAACTCTGCCCAAGCCCTTTGCCAAGTCCAAATGGCAGCCAACCTGCAAGGGTTGAAGTGAGAGTGAGAGAAGGAAGAGCTGT GAATATCCACATGTTCTGTGGTAGGAGACCTGGCCTTTTGCTCTCCACAATGACTGCATTGGACAACCTCGGCCTCGACATCCAACAAGCCGTTATTAGC TGTTTCAACGGCTTTGCCATGGACATCTTCCGAGCCGAGCAATGCAAAGAAGGGCAGGAGGTGCAACCAGAGCAAATCAAAGCAGTCCTTCTGGATTCTG CGGGCTATCATGGTTTGATATAA
AA sequence Show only first row Show all	>Lus10043199 pacid=23168284 polypeptide=Lus10043199 locus=Lus10043199.g ID=Lus10043199.BGIv1.0 annot-version=v1.0 MMDDNINNKNKDDAAASGGLNNGDKLNHNIILQNMGYKSMLQQEEEEGGEESEWYVPNKEMNFATSNLVADPDGLLLHHTVDHSSSSCSPSASSVFNNLV ADPNSQVHYFMQQPKPTSSSSFLNAMNPLDPGFDFGFLDNQLATNYSTLLNKPNGGMMFGADNCGGSGHQIGAHNFCSPNPQFQSNNNSMLQVLPETGGG EFRGFEEGNANGNNGLLFMNRSNKLLRPLESYPSVGEQPTLFQKRAALRKNLGNNNGKKEMVEMEEFSEKKRVLLSHGGGCGGGDSFLDDLSIDGSGLNY DSDELGDDTTKLDEICKAGGFSSSNANSASTGVTDQKGGGKKKGLPAKNLMAERRRRKKLNDRLYMLRSVVPRISKMDRASILGDAIEYLKELLQRINDL HNELESTPPGSSSLTPTAGATSFHPLTPTPSALSSHIKDKLCPSPLPSPNGSQPARVEVRVREGRAVNIHMFCGRRPGLLLSTMTALDNLGLDIQQAVIS CFNGFAMDIFRAEQCKEGQEVQPEQIKAVLLDSAGYHGLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G26744	bHLH	SCRM, ATICE1, I...	SCREAM, A. THALIANA INDUCER OF...		Lus10043199 [exp]	0	1
AT2G11890			adenylate cyclases (.1.2)		Lus10024472 [exp]	1.0	0.8927
AT1G18490			Protein of unknown function (D...		Lus10038962 [exp]	1.7	0.8419
AT4G14723		EPFL4, CLL2	epidermal patterning factor li...		Lus10006616 [exp]	3.6	0.7806
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	3.7	0.8109
AT5G14760		AO	L-aspartate oxidase (.1)		Lus10014539 [exp]	3.9	0.8268
AT5G01340		AtmSFC1	mitochondrial succinate-fumara...		Lus10005045 [exp]	6.9	0.8211
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Lus10000655 [exp]	8.4	0.7961
AT3G57120			Protein kinase superfamily pro...		Lus10016113 [exp]	11.2	0.7491
AT5G24650			Mitochondrial import inner mem...		Lus10015593 [exp]	11.2	0.7751
AT3G26990			ENTH/VHS family protein (.1)		Lus10032013 [exp]	18.0	0.7842

Compare expression of checked genes

Lus10043199 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.