Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 1040 / 0 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 522 / 8e-176 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 458 / 1e-151 ARF ARF11 auxin response factor 11 (.1.2.3) AT4G23980 458 / 4e-151 ARF ARF9 auxin response factor 9 (.1.2) AT3G61830 452 / 3e-149 ARF ARF18 auxin response factor 18 (.1) AT5G60450 390 / 3e-123 ARF ARF4 auxin response factor 4 (.1) AT1G35540 384 / 5e-123 ARF ARF14 auxin response factor 14 (.1) AT1G34410 377 / 2e-120 ARF ARF21 auxin response factor 21 (.1) AT1G34310 374 / 3e-119 ARF ARF12 auxin response factor 12 (.1) AT1G34170 369 / 2e-118 ARF ARF13 AUXIN RESPONSE FACTOR 13 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032541 [exp] 1668 / 0 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 527 / 2e-177 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 517 / 2e-173 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 497 / 1e-165 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10032413 [exp] 437 / 1e-147 AT4G23980 486 / 8e-170 auxin response factor 9 (.1.2) Lus10010969 [exp] 375 / 2e-117 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10024320 [exp] 372 / 2e-117 AT1G19850 724 / 0.0 MONOPTEROS, indole-3-acetic acid inducible 24, AUXIN RESPONSE FACTOR 5, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1) Lus10031354 [exp] 375 / 3e-117 AT5G37020 1013 / 0.0 auxin response factor 8 (.1.2) Lus10033598 [exp] 374 / 4e-117 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G106100 [exp] 1175 / 0 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 1174 / 0 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 747 / 0 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.001G066200 [exp] 746 / 0 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G001000 [exp] 534 / 3e-180 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.004G228800 [exp] 530 / 1e-178 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.014G100100 [exp] 491 / 3e-163 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 484 / 2e-160 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2) Potri.001G088600 [exp] 478 / 7e-158 AT4G23980 710 / 0.0 auxin response factor 9 (.1.2) Potri.002G172800 [exp] 465 / 5e-153 AT4G23980 662 / 0.0 auxin response factor 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10043200 pacid=23168060 polypeptide=Lus10043200 locus=Lus10043200.g ID=Lus10043200.BGIv1.0 annot-version=v1.0 ATGGCGTCTTCCGAGATTTCGATGAAAGGTAACAGTGGTAACGTCAGAGGAGAGAGCTTCTCCTCAAGTTACAGCGAGCAAACCGAAGGTAGGAAAGCCA TAGAAGGTCACAAGGGAGCTCCTCTTGCTCATCCCGGTGCTCCTATTGACGCTGAAGCTGCTTTGTACAAGGAGCTATGGCATGCCTGTGCTGGTCCTCT GGTGACAGTTCCTCGTAAGGGAGAGCTCGTTTACTACTTCCCTCAAGGACACATCGAGCAGGTCGAGGCATCCACAAATCAAGGGGCGGATCAGCAGATG CCACTTTATAATCTTCCGTCTAAGATCTTGTGTCGCGTGCTTAATGTTGAGTTGAAGGCTGAGCCAGATACTGACGAGGTGTTTGCACAAGTAACCTTGT TACCAGAGGCCAATCAAGATGAGAATGCAGTTAAGAAGGAACCCCCCCTGCCTCCTCCTCCAAGATTTCATGTACACTCGTTTTGCAAGACCCTGACTGC ATCAGATACCAGCACTCATGGTGGGTTTTCAGTGCTTAGGAGGCATGCTGACGAGTGTCTGCCACCACTGGATATGTCACGACAACCTCCAACCCAGGAG TTGGTTGCCAAAGACTTACACAGCATTGAATGGCGTTTCCGACATATTTTTCGAGGTCAACCCCGAAGGCATTTGCTTCAGAGTGGATGGAGTGTGTTTG TTAGCTCTAAAAGACTGGTTGCTGGTGATGCCTTTATATTTCTAAGAGGTGAGAATGGAGAGCTCCGTGTTGGTGTTAGACGAGCAATGCGACAGCAAGG AAATGTCCCCTCTTCTGTTATTTCCAGCCACAGCATGCATTTGGGCGTTTTAGCCACAGCCTGGCATGCAATTTCTACAGGAACCTTGTTCACTGTTTAT TATAAACCAAGGACAAGTCCATCACAGTTTATTGTTCCATATGATCAGTACATGGAATCCGCAAAAAGTAACTATACTATTGGCATGAGGTTTAAAATGA GGTTTGAGGGAGAAGAAGCTCCTGAGCAAAGATTTACTGGCACCATAGTTGGGATTGAAGATGCTGACCCTAAAAGGTGGCAAGAGTCAAAATGGAGATG CCTGAAAGTGAGATGGGATGAAAACTCGAGCATACCTCGTCCGGAAAGAGTGTCTCCCTGGCAAACAGAACCTGCTTTGGCCCCTCCTGCTTTGAATCCG CTCCCGATGGCTAGGCCAAAGAGGCCACGAACAAGTATTATTCCTTCATCACCTGATTCTTCTGTGCTCACCAGAGAAGTTTTGTCCAAAGTAACTGCAG ACCCTCCCCCAGCTGGTGGATACTCGAGGGTCTTGCAAGGTCAAGAATTATCGACCTTGAGAGGCAATTTCACTGAGAGCACCGAGTCTGACACTGCTGA AAAGTCTGTTAGATGGCCATTGTCTGTTGATGATGAAAAAATCGATGTCGTTTCTGCTGATAGAAGAACTGGACATGAGAGCTGGACGCCGACAGTGAGA CATGAACCAACTTACACAGATTTGCTGTCGGGCTTTGCAGGAAATACTGATTCTTCTTCCCATGGTTATAGTTCACCCTTTGCTGACCGAGGCTCTTTTC ATGGTAATTCTATGAGGAAGCGTGGAGTAGATCAGGATGGCAAGTTCAGCTTGCTTGGTAATCCATGGTCCTTGATGCCGGCAGGCCTTTCACTCAAGGT GTCTGATAGTAATGTGAAAGCCCCATGGCAAAGTGGTGATTTAGGTACCCCGGTGCGGGCAAATTCCAGATACAGTGCATTTAGCGAGTATGCCAAGGCT GATCAATCACATGTCAACTGGTTGATGCCTCCGCCGTCCCAGTTCGATCATCATCTCCAGACGAGAGATATGATGTCAAAGAGTATACTAGCTCCGGATC GTGACGCTGGGAAATCCACTGATGGGAACTGCAAGCTGTTTGGCATTCCGCTGATTAGTAACTCTAAGGTTGCTGATGTAGCAGCATCACACAAGAGTAC TATGAATGACTCGGTTGACCATACAAATGCTTCTAGTCAACATCATTCACGGGAATATGATCAACTGGAGCAGTCAAAGAGTAGCAAGATGAACAATGAA AGTGAGCATGAAAACCGAGTTGAACATTCACATGTACGGGACAATCATGGGAAGTCTCATTGTGGTTCAACTAGGAGTTGCACAAAGGTTCACAAGCAGG GGATCGCTCTTGGTAGATCTGTTGATCTGAGCAAGTTTAACAACTATGAGCAATTGATTGCTGAATTGGACCGGTTGTTTGAGTTTGGTGGTGAACTAAT TGACCCAAAGCAGAACTGGATGATAGTGTATACTGATGATGAAGGAGACATGATGCTTGTTGGAGACGACCCTTGGCAGGAATTTGTAGGGATGGTGAGG AAGATATTCATCTACACGAGGGAAGAAGTACAGAAGATGAATCCTGGGAGTTTGAACAGCAAGGGGAACAACAATTGCGATGGAGAAGGCGGTGAAATGA AGCAATCGGCGGTGGGGGCATGCTCGTTGGCTTCTGCCTCGGAGAACTGCTAG
AA sequence Show only first row Show all	>Lus10043200 pacid=23168060 polypeptide=Lus10043200 locus=Lus10043200.g ID=Lus10043200.BGIv1.0 annot-version=v1.0 MASSEISMKGNSGNVRGESFSSSYSEQTEGRKAIEGHKGAPLAHPGAPIDAEAALYKELWHACAGPLVTVPRKGELVYYFPQGHIEQVEASTNQGADQQM PLYNLPSKILCRVLNVELKAEPDTDEVFAQVTLLPEANQDENAVKKEPPLPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQE LVAKDLHSIEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISSHSMHLGVLATAWHAISTGTLFTVY YKPRTSPSQFIVPYDQYMESAKSNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWQESKWRCLKVRWDENSSIPRPERVSPWQTEPALAPPALNP LPMARPKRPRTSIIPSSPDSSVLTREVLSKVTADPPPAGGYSRVLQGQELSTLRGNFTESTESDTAEKSVRWPLSVDDEKIDVVSADRRTGHESWTPTVR HEPTYTDLLSGFAGNTDSSSHGYSSPFADRGSFHGNSMRKRGVDQDGKFSLLGNPWSLMPAGLSLKVSDSNVKAPWQSGDLGTPVRANSRYSAFSEYAKA DQSHVNWLMPPPSQFDHHLQTRDMMSKSILAPDRDAGKSTDGNCKLFGIPLISNSKVADVAASHKSTMNDSVDHTNASSQHHSREYDQLEQSKSSKMNNE SEHENRVEHSHVRDNHGKSHCGSTRSCTKVHKQGIALGRSVDLSKFNNYEQLIAELDRLFEFGGELIDPKQNWMIVYTDDEGDMMLVGDDPWQEFVGMVR KIFIYTREEVQKMNPGSLNSKGNNNCDGEGGEMKQSAVGACSLASASENC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10043200 [exp]	0	1
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	2.0	0.8613
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	2.2	0.8896
AT5G08120		MPB2C, ATMBP2C,...	movement protein binding prote...		Lus10017881 [exp]	3.7	0.8500
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	6.0	0.8636
AT4G33630		EX1	EXECUTER1, Protein of unknown ...		Lus10020435 [exp]	6.9	0.8319
AT3G45830			unknown protein		Lus10018121 [exp]	7.9	0.8699
AT5G22450			unknown protein		Lus10004878 [exp]	12.4	0.8613
AT5G19420			Regulator of chromosome conden...		Lus10036030 [exp]	12.8	0.8312
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	14.9	0.8536
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	14.9	0.8317

Compare expression of checked genes

Lus10043200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.