Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18730 102 / 8e-24 unknown protein AT5G18740 101 / 2e-23 Domain of unknown function (DUF3444) (.1) AT5G27240 100 / 1e-22 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G18750 99 / 4e-22 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 93 / 2e-20 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G35753 87 / 2e-18 Domain of unknown function (DUF3444) (.1) AT2G05230 86 / 3e-18 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 86 / 3e-18 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04960 81 / 1e-16 Domain of unknown function (DUF3444) (.1), Domain of unknown function (DUF3444) (.2), Domain of unknown function (DUF3444) (.3), Domain of unknown function (DUF3444) (.4) AT5G53150 79 / 7e-16 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032539 [exp] 335 / 3e-116 AT5G18750 87 / 4e-20 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10032540 [exp] 311 / 1e-106 AT2G25560 71 / 3e-14 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10018975 [exp] 115 / 1e-27 AT5G27240 225 / 3e-61 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10033983 [exp] 110 / 6e-26 AT5G27240 557 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10037161 [exp] 103 / 1e-23 AT5G27240 335 / 6e-100 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036769 [exp] 101 / 4e-23 AT5G27240 320 / 2e-92 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10042540 [exp] 88 / 2e-18 AT5G27240 210 / 4e-56 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10004129 [exp] 86 / 5e-18 AT5G27240 265 / 4e-82 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001726 [exp] 85 / 1e-17 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G018800 [exp] 110 / 4e-26 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 110 / 6e-26 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 105 / 1e-24 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 84 / 2e-17 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G097800 [exp] 83 / 5e-17 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 82 / 8e-17 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 81 / 2e-16 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 80 / 4e-16 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 80 / 5e-16 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G098800 [exp] 79 / 8e-16 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11926 [flax] [poplar] DUF3444 Domain of unknown function (DUF3444)
Representative CDS sequence Show only first row Show all	>Lus10043201 pacid=23168304 polypeptide=Lus10043201 locus=Lus10043201.g ID=Lus10043201.BGIv1.0 annot-version=v1.0 ATGAATAAAAACGAAGTAGATGCCTTGAGAGAGAAAAGGACGGCGGAACAGATCATGATGAGAGGAGAAGATTACAGCAAGGCTATGGAGCATTTACTTA AGGCTCGCGAGCTGTTTCCTCCGGGACTTGACGACGTCGAATCTCTAACAGCCGCTTGTGAAATCTTGTCCGCAGCCAACGGTGAGATTAACATTCCGGG AAGTGGTGTAGTGGATCACTACTTTATTCTCGGAGTCGACCCCTCTGCTAGCTTTTCCGACGTCCGATCTCGATTCCACAAGCTCACCAACTTGCTGCAA ACCCTCAAGAAGAAGCAAGCATACGCGGGGTTCGGCCGAAGAGCCTTCGCACTGTTGGATAATGCTCTATTGGTGCTCACGGACAGGGAGAAGCGCACCG ATTTTGACCGGAGAAGAAATCAGTGCTTCAAGGCTTGTGAAAGCAATGCTGCTTCATTGATGTCTAATTGGAGCTGTTGGAGTGTGAAGGATCTTGTTGC TGGTCAAATTTGGGCTGTGTATGGGGTGGAGACTCATAGCTCTCTGCCGAGACAATACGTCCGGTTTGATAAGACGGTATCCGAGGTGGAAGCAGTGGTG ACATACTTGGAACCTGCAGGTATTCTTGATCACGAGGTGAAAGCGTCCAGGGAGAGGCTCCCGATTTCTTGCGGGACGTTCAGGATCGGTGAGAGGAGCT GCAGCATTGATCTTTCACGGTTCTCATTTCGTGTCAGGTACCAGCAGACAAGTGGGTTGTGCTACAAGATATACCCACAGAAGGGGGAGGTGTGGGCAAT GTACAGAGGGTGGAGTATGAAATGGGGAGTATCGGACTACGGAAACTGTGAGTACAATGTAGTCCAAGTGGATTCCAGCATTACAGAAAGGCATGATGGC GGCACCCTTGTGACAAGGATGGAGACAGTGGAAGGTTGCTTCACATTTGGATGTCGTTGTAAGGATGGGAGTGATGCAAGTCGTGTTATTCCAAGAGGTA ATCTGCTTTGCTTTTCTCATCGCATACCGGCGTTCAAGGTGTCTGGGATTCAGCAGTTTGGGGTACCAGCGGAGGAGTCTTGGCACCTGGAACCAAATGC ACTGCCGTAG
AA sequence Show only first row Show all	>Lus10043201 pacid=23168304 polypeptide=Lus10043201 locus=Lus10043201.g ID=Lus10043201.BGIv1.0 annot-version=v1.0 MNKNEVDALREKRTAEQIMMRGEDYSKAMEHLLKARELFPPGLDDVESLTAACEILSAANGEINIPGSGVVDHYFILGVDPSASFSDVRSRFHKLTNLLQ TLKKKQAYAGFGRRAFALLDNALLVLTDREKRTDFDRRRNQCFKACESNAASLMSNWSCWSVKDLVAGQIWAVYGVETHSSLPRQYVRFDKTVSEVEAVV TYLEPAGILDHEVKASRERLPISCGTFRIGERSCSIDLSRFSFRVRYQQTSGLCYKIYPQKGEVWAMYRGWSMKWGVSDYGNCEYNVVQVDSSITERHDG GTLVTRMETVEGCFTFGCRCKDGSDASRVIPRGNLLCFSHRIPAFKVSGIQQFGVPAEESWHLEPNALP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10043201 [exp]	0	1
AT1G09300			Metallopeptidase M24 family pr...		Lus10031427 [exp]	1.4	0.8961
AT2G33640			DHHC-type zinc finger family p...		Lus10016036 [exp]	8.5	0.8965
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Lus10002430 [exp]	8.5	0.8896
AT1G59520		CW7	CW7 (.1.2.3)		Lus10003786 [exp]	10.8	0.8640
AT1G08220			unknown protein		Lus10005355 [exp]	11.8	0.8709
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Lus10002571 [exp]	12.6	0.8886
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	13.2	0.8255
AT5G05670			signal recognition particle bi...		Lus10029130 [exp]	14.0	0.8731
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10025184 [exp]	18.2	0.8624
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	18.3	0.8753

Compare expression of checked genes

Lus10043201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.