Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61970 468 / 6e-160 signal recognition particle-related / SRP-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032538 [exp] 695 / 0 AT5G61970 487 / 5e-170 signal recognition particle-related / SRP-related (.1) Lus10040614 [exp] 483 / 2e-169 AT5G61970 345 / 3e-114 signal recognition particle-related / SRP-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105600 [exp] 543 / 0 AT5G61970 915 / 0.0 signal recognition particle-related / SRP-related (.1) Potri.012G106200 [exp] 528 / 0 AT5G61970 904 / 0.0 signal recognition particle-related / SRP-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043202 pacid=23168165 polypeptide=Lus10043202 locus=Lus10043202.g ID=Lus10043202.BGIv1.0 annot-version=v1.0 ATGGGGAAAGACAGCGAAGCCACGGCGATGGAACTCGACGGCTCGAAACCGAACGATTCTGATCAGATTAATCCTAGATACTCAATTAACGCCTCGGTTG AACTGAAGGTTGAGTTTCTTCCAATTCTCAGTTTTACAGCTCCTAAAGTCGGCCCAAATGCAGCACGGACTGCGGCATGGAGATTATACTCGATATCGTG CAGAAGGTACTGCACTGCTCGGTTGAGGAGGTTATATAAGTCTCTCAAATTCACCCATGGCCGTGGTAAATACACTCGTAGAGCTATAGCTGAAGCAACT GTGACAGAAGTGAGGTATTTGCATGTGCTTCTTTATACGGCGGAAAGAGCTTGGAGCCATGCAATGGAGAAGAGACAGCTTCCAGATGGCCCCAACGCAC GCCAGAGAATTTATTTGATTGGTAGGCTGAGGAAAGCAGTGAAATGGGCTAATCACTTTTCTCGACTATGTGCTGCAAAGGGAGATTCCAAGACGTCTTT AGAAGCTGAGGCTGTTATTTCTGAGGCAAGGACTCAACAGGCTGCATCCTTGACGGAATTTCACTGGCTCGGGCACAAATATCCTATCTCTAATGCAAAA ACTCGAGTTTCTATACTAAAAGCTCAAGAGCTGGAGAAAGATTTGGATGGTAGAGCTAATGATTCACTTCCAGCAGACAAAAAGCTAGCAGTATTTGACA AAATATTTACGGCATACCATGAAGCTCGGGGCTATATTAGGAGCGACTTGACTGGTGCCGGTAATGCTGACCGCGTGAAGGATGACTTGAGCGGTCTGCA CGATGCTGTCACAGCTGTTTTAGGACTACGAACGATAGAGCGTAACCGTCTGTTGGTTAGCATTGCTAAAAGTAAGTTAGTCAAACGCCGGGATGAAAAG AATGAGAAGGCTACCAAGCCAGAAGAACTTGTTCGCCTGTATGATCTATTGCTACAGAATGCGGATGATCTTTCTGAATTGGTCAGCTCGCGGAAAGAGA GAACATCAGAAGAAGTTGCATTTGCTGAAGAGTGTGGACTTAGGCGTTTAGCTTTCCGCGCTGAAAGGTGTTTCTATTTGGCAAAGTCGTACAGCATAGC TGGCAAGAGAGCAGAAGCTTATGTTCTCTACTGTCATGCCCAATCCCTTGCAGAGAATGCCTTGAAGAGTTATCAAGCTTCGAGTGACAAAGATGAGATG ACGATCAAGGAGCTGAAGGCTTTATACAGCGAGTGCAGATCTAGTAGTTGCATAGAGCACGCACTAGGGATTATGGAGGAAGAGAAGGCTCCTGAAAATC TCTCAACGAGAATCTCTAATTTATCTTTGAATGGGGCTAACAACATGAAATTCCTTCTTCAGAATCTCGACGTGTATGAAGCTGCTCTCGGTGATCCAAC TGCGAAACCAACTCAACCTCCACGCATCGAAGCCTTTCCTCCATCCTTCCAGTCGATTCCTCGAAATCCTATCATTCGAGATCTCGCATACGAGTATATT GATTTCCCATCGCTGGAGAATAGGATGAAGAAGCGAGGTCTGATTAGTAGGTTGTGGGGAAGATAA
AA sequence Show only first row Show all	>Lus10043202 pacid=23168165 polypeptide=Lus10043202 locus=Lus10043202.g ID=Lus10043202.BGIv1.0 annot-version=v1.0 MGKDSEATAMELDGSKPNDSDQINPRYSINASVELKVEFLPILSFTAPKVGPNAARTAAWRLYSISCRRYCTARLRRLYKSLKFTHGRGKYTRRAIAEAT VTEVRYLHVLLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWANHFSRLCAAKGDSKTSLEAEAVISEARTQQAASLTEFHWLGHKYPISNAK TRVSILKAQELEKDLDGRANDSLPADKKLAVFDKIFTAYHEARGYIRSDLTGAGNADRVKDDLSGLHDAVTAVLGLRTIERNRLLVSIAKSKLVKRRDEK NEKATKPEELVRLYDLLLQNADDLSELVSSRKERTSEEVAFAEECGLRRLAFRAERCFYLAKSYSIAGKRAEAYVLYCHAQSLAENALKSYQASSDKDEM TIKELKALYSECRSSSCIEHALGIMEEEKAPENLSTRISNLSLNGANNMKFLLQNLDVYEAALGDPTAKPTQPPRIEAFPPSFQSIPRNPIIRDLAYEYI DFPSLENRMKKRGLISRLWGR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61970			signal recognition particle-re...		Lus10043202 [exp]	0	1
AT1G72660			P-loop containing nucleoside t...		Lus10037676 [exp]	2.8	0.8809
AT4G14420			HR-like lesion-inducing protei...		Lus10021877 [exp]	7.7	0.8649
AT2G07715			Nucleic acid-binding, OB-fold-...		Lus10037433 [exp]	8.0	0.8048
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10031432 [exp]	8.3	0.8275
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10014295 [exp]	12.0	0.8323
AT3G12300			unknown protein		Lus10005383 [exp]	13.5	0.8814
AT2G45240		MAP1A	methionine aminopeptidase 1A (...		Lus10021657 [exp]	17.9	0.8732
AT4G39280			phenylalanyl-tRNA synthetase, ...		Lus10014563 [exp]	18.0	0.8425
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	20.0	0.7869
AT1G31970		STRS1	STRESS RESPONSE SUPPRESSOR 1, ...		Lus10000894 [exp]	21.6	0.8606

Compare expression of checked genes

Lus10043202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.