Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61960 704 / 0 AML1 MEI2-like protein 1 (.1.2) AT5G07290 684 / 0 AML4 MEI2-like 4 (.1) AT2G42890 419 / 2e-132 AML2, MEI2 MEI2-like 2 (.1.2.3) AT1G29400 309 / 9e-92 AML5 MEI2-like protein 5 (.1.2) AT4G18120 228 / 3e-63 AML3 MEI2-like 3 (.1.2) AT3G26120 124 / 3e-29 TEL1 terminal EAR1-like 1 (.1) AT1G67770 111 / 3e-25 TEL2 terminal EAR1-like 2 (.1) AT5G07930 83 / 3e-17 MCT2 MEI2 C-terminal RRM only like 2 (.1.2.3) AT1G37140 72 / 1e-13 MCT1 MEI2 C-terminal RRM only like 1 (.1.2) AT5G54900 59 / 6e-09 ATRBP45A RNA-binding protein 45A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032537 [exp] 1658 / 0 AT5G61960 664 / 0.0 MEI2-like protein 1 (.1.2) Lus10020769 [exp] 526 / 1e-173 AT1G29400 786 / 0.0 MEI2-like protein 5 (.1.2) Lus10007346 [exp] 520 / 9e-171 AT1G29400 779 / 0.0 MEI2-like protein 5 (.1.2) Lus10004591 [exp] 299 / 1e-87 AT1G29400 908 / 0.0 MEI2-like protein 5 (.1.2) Lus10011968 [exp] 296 / 8e-87 AT1G29400 900 / 0.0 MEI2-like protein 5 (.1.2) Lus10036953 [exp] 125 / 2e-29 AT3G26120 429 / 7e-143 terminal EAR1-like 1 (.1) Lus10006234 [exp] 124 / 4e-29 AT3G26120 431 / 2e-144 terminal EAR1-like 1 (.1) Lus10002047 [exp] 97 / 4e-22 AT3G26120 167 / 1e-48 terminal EAR1-like 1 (.1) Lus10002046 [exp] 99 / 2e-21 AT3G26120 298 / 4e-94 terminal EAR1-like 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106000 [exp] 1014 / 0 AT5G61960 767 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107100 [exp] 942 / 0 AT5G07290 750 / 0.0 MEI2-like 4 (.1) Potri.003G162700 [exp] 755 / 0 AT5G07290 645 / 0.0 MEI2-like 4 (.1) Potri.001G067300 [exp] 718 / 0 AT5G61960 627 / 0.0 MEI2-like protein 1 (.1.2) Potri.012G107900 [exp] 366 / 2e-116 AT1G29400 288 / 2e-88 MEI2-like protein 5 (.1.2) Potri.005G202000 [exp] 288 / 1e-83 AT1G29400 778 / 0.0 MEI2-like protein 5 (.1.2) Potri.002G059800 [exp] 284 / 2e-82 AT1G29400 781 / 0.0 MEI2-like protein 5 (.1.2) Potri.010G051100 [exp] 132 / 1e-31 AT3G26120 259 / 3e-77 terminal EAR1-like 1 (.1) Potri.008G183000 [exp] 129 / 9e-31 AT3G26120 455 / 1e-152 terminal EAR1-like 1 (.1) Potri.013G084400 [exp] 94 / 3e-20 AT3G26120 150 / 2e-40 terminal EAR1-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF04059 [flax] [poplar] RRM_2 RNA recognition motif 2 CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10043204 pacid=23168258 polypeptide=Lus10043204 locus=Lus10043204.g ID=Lus10043204.BGIv1.0 annot-version=v1.0 ATGCCGTTTGAGATCATGGATCAAAGGGGTGTTACTGCTTCTTCCCATTTCTTTGAGGACATTTGCCTTCCCGCCGAGAGACAAGTTGGGTTTAGGAAAC CATATTCAATGACCGATCACCACCAAGGTGGACATCAAACCATGCCGATACCTGGAAACAAATTTGTTGCTTCGTCACCCTTTGATTCCCTTTCGCCAGC TAGTGCTCTGTCAATGGAACTGCCTCGGTCAATCGTCACTAGACCTAGTAATGGAAAATTAAGCAATGGGGAAGGGACATCTAACGCTGGATGGAATTCT GTCGATCACCATCCAAAGTCGTGGTCTAGTTTGTCATCACACCCTGCAGCAGCTCATAGTTTGCGCCAAAATGGAGCTAATATTACTGGGACTGAGTGGG AGAGCAGTTTGTTCTCAAGCTCATTTTCTGAAATATTCAATAGGAAAATGAGGTTAATGGGTAATGACATTCAATCTCGAGAACCGACAAAAGTTGCTGT TTCTGCTCTTGAGGAAGAGCCCTTTGAGTCTCTTGAAGAAATTGAGGCACAGACTATTGGGAATCTTCTCCCTGCTGACGATGATCTATTTTCTGGCATC ACTAATGACTTGGGGAGTATTCTCAACGGCACTGTTGGAGATGATTTAGAAGATTTTGATCTTTTTAGCAGTGGGGGAGGAATGGAATTAGAAGGGGATA TCATTGCTGGGCGAAAAAATGCTGATCTTTTTTCACTTTCTAGTGGTTCCATCACTAGTAAACACCCCTTTGGTGAACTGCCTTCCAGAACACTTTTCGT TAGAAATATCAACAGTAATGTGGAAGATTCTGAATTGAAAACACTCTTTGAGCAATATGGGGAGATCCGAACCCTGTACACAACTTGCAAGCATCGCGGA TTCGTAATGATCTCGTATTATGATATACGAGCTGCTCAAAATGCGATGCAATCACTTCAACATAAGCCTCTGAGACGTAGAAAACTTGACATACACTTTT CAATTCCAAAGGAGAATCCATCAGAGAAAGATGTCAACCAAGGAATCCTAACAGTTCTCAACCTTGATTCCTCTGTTTCAACAGATGAGCTTCATCAGAT ATTTGCTGCTTATGGAGAAATCAAAGAGGTCCATGGCAACCAAAATAAGCATAATCATATACTCATAGAGTACTATGATGTCAGATCTGTAGAAGCTGCC CTTAACGCCTTAGATAGAACTGAGATTGCTGGGAAGCAGATTAAACTTGAAGCAGGCACAATGGGTGCTGCAAGACGGTCAGTGCAGGGGCAAGATGAAA CCAGTCTTGGAAGTCAAATTAACGACTTGTCTTCTATGCAAATGGCAGCTTTTTCTCCTGGAGTGATGACATCCAGTTGCATGGATGGCATACCATCCCA GGTTGCACATTCCCCCATAGGTGCATTTATTGATCCTCATCAGAGTTCTAGTGTTCCGAATCATCTACGGTCTCGAGAAGCATCAGTTGCCAAGCAATTC AGCCACCCTGATCACCAACGTTCCATTCAGGAAATTAGGTTTAGTAATCATAGCATGTCCGCTTTCCATCCTCATTCACTTCCAGAGTACCATGATGGTC TGACAAACGGAATTCCCTACAACTCTGCAAGCACCCTAGGAGGCATGGCTGGTAGTGTTGGTTCGCAAGTGATGGAGGGAATTAATGGTAGGCATGGTCG TGGAGTATCTTCTAATGTGCACATGATGGAACTTAATAGTCGTGGTTCTTTTGGTTTCGGTTCTCCCGGAAATGGAAGCACTCTCCCTGGTCATTATTCA TGGAATAATTCAACCTCTGTTCATCAAAAGCCGGCTAATCATATGATGTGGCCTAATTCTGGATCCTTTGTCAATGGTTTTCGGGCTCATCCTCTTTCTC ATCTCAATGGACTTCCGAGGGCACCTACCGCGATGCTGAACCGAGGACCTGCACCCCACCATGTTGGCTCTGCGCCAGCTGTCAACCCGTCCTTGTGGGA CTCTCCAGACCCTTCCAGCTTCCATTTGGGTTCGCTCGGAAGCATGGGGGGATTTGCTAGTAGCTCTCCACCACATCCTATGGAGAACATTTTCCCGCAC GTTAATGGCAATTGTGTGGACATATCAAAAAGCGCCGCTGGCATACGCTCACCTCAGCAAATGTGCCACCTTTTCCCTGGAAGAAACCAAATGGTTTCAA TGCCTTCTTCATCTTTTGATTCTCCAAACGACCGTGTCAGGAATTTGTCACATCGCAGAATGGAATCCAACTCCAATCAGTCGGATAAGAAGCAGTTTGA ACTGGATGTTGAGCGCATCGCACGTGGCGAAGATAGCCGGACCACATTGATGATAAAGAACATTCCAAACAAGTACACTTCAAAGATGCTTCTTGCTGCG ATTGATGAGTACTGCCGCGGATCTTATGATTTTCTCTATCTGCCAATTGACTTCAAGGCAAGTTATTTCATCTCCTGTCCTTTGAAGCTTCCTACTGTCG AGTTCTTTAACAAATGCAATGTGGGTTATGCATTCATCAACATGACTGATCCGCAACAGATCATTCCGTTCCATAAGGCGTTCAATGGGAAAAAGTGGGA GAAGTTCAACAGTGAAAAGGTGGCATCTTTGGCGTATGCTCGGATTCAAGGAAAGGCGGCTCTTATTTCCCATTTCCAGAATTCGAGCTTGATGAACGAG GATAAACGCTGTCGGCCTATACTGTTCCACACAGAAGGTCCAAATGCTGGCGACCCGGAGCCTTTCCCCATGGGTACGAACATTAGGTCGAGAATGGGGA GGCCACGAAGCAGCAGCCACGAAGGGAGCCACCACCACCGCCAAGGGAGCCCATCATCGGCAGCAAACATGGATGGAACGGACACATCCTCTAATTCTGA CTGA
AA sequence Show only first row Show all	>Lus10043204 pacid=23168258 polypeptide=Lus10043204 locus=Lus10043204.g ID=Lus10043204.BGIv1.0 annot-version=v1.0 MPFEIMDQRGVTASSHFFEDICLPAERQVGFRKPYSMTDHHQGGHQTMPIPGNKFVASSPFDSLSPASALSMELPRSIVTRPSNGKLSNGEGTSNAGWNS VDHHPKSWSSLSSHPAAAHSLRQNGANITGTEWESSLFSSSFSEIFNRKMRLMGNDIQSREPTKVAVSALEEEPFESLEEIEAQTIGNLLPADDDLFSGI TNDLGSILNGTVGDDLEDFDLFSSGGGMELEGDIIAGRKNADLFSLSSGSITSKHPFGELPSRTLFVRNINSNVEDSELKTLFEQYGEIRTLYTTCKHRG FVMISYYDIRAAQNAMQSLQHKPLRRRKLDIHFSIPKENPSEKDVNQGILTVLNLDSSVSTDELHQIFAAYGEIKEVHGNQNKHNHILIEYYDVRSVEAA LNALDRTEIAGKQIKLEAGTMGAARRSVQGQDETSLGSQINDLSSMQMAAFSPGVMTSSCMDGIPSQVAHSPIGAFIDPHQSSSVPNHLRSREASVAKQF SHPDHQRSIQEIRFSNHSMSAFHPHSLPEYHDGLTNGIPYNSASTLGGMAGSVGSQVMEGINGRHGRGVSSNVHMMELNSRGSFGFGSPGNGSTLPGHYS WNNSTSVHQKPANHMMWPNSGSFVNGFRAHPLSHLNGLPRAPTAMLNRGPAPHHVGSAPAVNPSLWDSPDPSSFHLGSLGSMGGFASSSPPHPMENIFPH VNGNCVDISKSAAGIRSPQQMCHLFPGRNQMVSMPSSSFDSPNDRVRNLSHRRMESNSNQSDKKQFELDVERIARGEDSRTTLMIKNIPNKYTSKMLLAA IDEYCRGSYDFLYLPIDFKASYFISCPLKLPTVEFFNKCNVGYAFINMTDPQQIIPFHKAFNGKKWEKFNSEKVASLAYARIQGKAALISHFQNSSLMNE DKRCRPILFHTEGPNAGDPEPFPMGTNIRSRMGRPRSSSHEGSHHHRQGSPSSAANMDGTDTSSNSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10043204 [exp]	0	1
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10013588 [exp]	3.3	0.8705
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10017184 [exp]	5.0	0.8662
AT2G34680		AIR9	AUXIN-INDUCED IN ROOT CULTURES...		Lus10023270 [exp]	6.9	0.8432
AT5G42950			GYF domain-containing protein ...		Lus10012078 [exp]	9.3	0.8678
AT5G61960		AML1	MEI2-like protein 1 (.1.2)		Lus10032537 [exp]	10.4	0.8672
AT3G17900			unknown protein		Lus10036712 [exp]	13.0	0.8388
AT5G36950		DEGP10	DegP protease 10 (.1)		Lus10008726 [exp]	14.2	0.8648
AT3G15630			unknown protein		Lus10017768 [exp]	15.0	0.7916
AT3G10650		AtNUP1	unknown protein		Lus10043447 [exp]	17.5	0.8617
AT3G51120			DNA binding;zinc ion binding;n...		Lus10025973 [exp]	18.2	0.8385

Compare expression of checked genes

Lus10043204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.