Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G59280 129 / 9e-39 TXR1 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) AT5G61880 125 / 3e-37 Protein Transporter, Pam16 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032532 [exp] 157 / 8e-49 AT3G59280 114 / 4e-33 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G106600 [exp] 134 / 9e-41 AT3G59280 171 / 1e-56 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) Potri.012G108600 [exp] 132 / 4e-40 AT3G59280 171 / 1e-56 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1) Potri.014G151200 [exp] 130 / 2e-39 AT3G59280 187 / 7e-63 THAXTOMIN A RESISTANT 1, Protein Transporter, Pam16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF03656 [flax] [poplar] Pam16 Pam16
Representative CDS sequence Show only first row Show all	>Lus10043207 pacid=23168025 polypeptide=Lus10043207 locus=Lus10043207.g ID=Lus10043207.BGIv1.0 annot-version=v1.0 ATGAGAGTGAAAGTTCGTGGAGGAATTAATCGAGCTAAGCTGATATTTCTTGTTTGGCCCTGCCGCGCAATCAATTCATTCGTTCATTCCTCCGGAAACT TCACCCAGCTAAACCTACGGTACAACCATCGCCGGAAGAATCTTCTTCTCAGTGTTTATCTGCTTGGACTTTTGGATGAAACTAGAAGCGATATCTGCTT GGACTTTTGGATGAAACTAGAAGTGATATCTGCTAGAGCTGGCAGACTTATTGCTAACTTGATCGTGGTGGGCGGCGGGGTGTTGGTGAGGGCTGTTGCC CAGGCATATCGGCAAGCACTTCAAAATGCATCAAAGAATGGGGTGGCACAAGAAGCAATGCAGAACGTGAAGAGAGTAAGTAAGGCGATGAGCGAGTCGG AAGCGAGGCAGATTCTAGGAGTTTCTGAGAATGCATCTTGGGAGGAGGTTTTGAAGAAATATGATGCCTTGTTTGAGAACAACGCGAAGAACGGCAGCTT CTACCTCCAGTCGAAGGTCTTCAGAGCTAAAGAGTGCCTAGAAAGCGCAGGCAAGAAGGCGGGTGTTGGTGAATGA
AA sequence Show only first row Show all	>Lus10043207 pacid=23168025 polypeptide=Lus10043207 locus=Lus10043207.g ID=Lus10043207.BGIv1.0 annot-version=v1.0 MRVKVRGGINRAKLIFLVWPCRAINSFVHSSGNFTQLNLRYNHRRKNLLLSVYLLGLLDETRSDICLDFWMKLEVISARAGRLIANLIVVGGGVLVRAVA QAYRQALQNASKNGVAQEAMQNVKRVSKAMSESEARQILGVSENASWEEVLKKYDALFENNAKNGSFYLQSKVFRAKECLESAGKKAGVGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	0	1
AT4G05530		SDRA, IBR1	SHORT-CHAIN DEHYDROGENASE/REDU...		Lus10015542 [exp]	1.0	0.8849
AT3G62790			NADH-ubiquinone oxidoreductase...		Lus10035034 [exp]	1.7	0.8808
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	2.0	0.8824
AT2G21290			unknown protein		Lus10018053 [exp]	3.6	0.8360
AT1G11930			Predicted pyridoxal phosphate-...		Lus10020039 [exp]	3.7	0.8433
AT5G38900			Thioredoxin superfamily protei...		Lus10034369 [exp]	5.5	0.8583
AT5G08290		YLS8	YELLOW-LEAF-SPECIFIC GENE 8, m...		Lus10017390 [exp]	6.6	0.8639
AT3G60480			unknown protein		Lus10034728 [exp]	8.5	0.8044
AT5G04000			unknown protein		Lus10018038 [exp]	9.2	0.8250
AT1G09330		ECHIDNA, ECH	unknown protein		Lus10004514 [exp]	9.4	0.8420

Compare expression of checked genes

Lus10043207 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.