Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50990 514 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 356 / 3e-118 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 356 / 7e-118 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G14820 348 / 6e-114 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G21065 338 / 2e-113 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G31920 334 / 7e-110 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 331 / 1e-108 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G01510 327 / 2e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G23330 325 / 2e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G26782 322 / 1e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000230 [exp] 779 / 0 AT5G50990 516 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032531 [exp] 725 / 0 AT5G50990 625 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000117 [exp] 342 / 8e-116 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028837 [exp] 342 / 3e-115 AT1G11290 650 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039388 [exp] 342 / 6e-113 AT5G43790 506 / 8e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039117 [exp] 344 / 7e-113 AT3G24000 740 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 342 / 8e-113 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006628 [exp] 334 / 9e-113 AT4G21065 399 / 7e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017446 [exp] 347 / 1e-112 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109300 [exp] 559 / 0 AT5G50990 616 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G105700 [exp] 353 / 1e-116 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 353 / 1e-116 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G001200 [exp] 350 / 2e-116 AT3G24000 798 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 350 / 7e-116 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.003G031600 [exp] 353 / 1e-115 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G128900 [exp] 348 / 1e-114 AT3G08820 812 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G050200 [exp] 346 / 2e-114 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 340 / 1e-113 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 342 / 5e-113 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10043208 pacid=23167941 polypeptide=Lus10043208 locus=Lus10043208.g ID=Lus10043208.BGIv1.0 annot-version=v1.0 ATGCTTAGTTCGAACGTCGATCCGGATAAGTTCACATTTGCATCCGTGATGCCCGCCTGTGCAAAGCTTGGAAGTCTCCCCCAGGCTCAGTGGCTACACA CAGTGATGATTGAGAAGAGAATCGAAGTGAACTCTATTCTGGTTGCAGCTATGATTGACATGTATTCGAAATGCGGTGGAATCGATGCTGCTAAAAGTGT TTTTGAGAGGGTTCAGCGGGATAATGCTTCGATTTGGAATTCAATGATCAATGGCTTTGCAATTCATGGCTTTGCCTTGGATGCAATTGCAGTGTTTTCA AATATGGAGTTTGAAGACGTCTCTCCGGATAGTATAACGTTTCTAGGACTTCTCACTGCGTGTAGTCATTCCGGCTTGGCCAAAGAAGGTAGACATTATT TCGGTTTGATGAAAATTCGGTATTCGCTCGAACCAGAGCACGAGCATTACGGAGCCCTGGTTGATCTCTTGGGCCGAGCCGGATTTTTAGAGGAAGCTCG TGATGTGATCATGTCAATGCCTATTGAGACGGATGTTGTTATATGGAGGGCCCTTCTTAGTGCTTGTAGACTGCACAAAGCCCCCGAAATCGGTAAGCTT GCGATTGCTAATATCTCGCGGCTGAAAGGTGGTGATTATGTATTGCTTTCGAACATATACTGCTCCCAACAGAAATGGGACAGTGCGCAGAGAGTTAGGG AGATGATGAAGAAGGATGGGGTGAGTAAGAAGAAGGGAATTAGTTGGTTTGAATGGGGCGGGGGATTTCACCATTTCAAGTCTGGTGATAGATCTCATCC TGAGATAGCTGCGGTGTACAAAGTTGTCGGAGGGCTGATTGAAAAGGCGAAGTTGTTTGGGTTTGTCCCCAAGACTGAGTTGGTGATGATGGATGTGTCG GAAGAGGAGAAGGAGGAGAATCTTCATCATCACAGTGAAAAGTTGGCGTTGGCGTACGGGATTCTGAAGACTGCTCCTGGAACGGAAATAAGAATCTCAA AGAATCTTCGAATCTGTGCCCCCTGCCACAGCTGGTTTAGATTTGTTTCGATGGCGTTGAACCGAGTTATTCTTGTTAGAGATCGGGTCCGGTTTCACAG GTTTGAAGGGGGATCGTGTTCTTGTGGAGATTATTGGTAA
AA sequence Show only first row Show all	>Lus10043208 pacid=23167941 polypeptide=Lus10043208 locus=Lus10043208.g ID=Lus10043208.BGIv1.0 annot-version=v1.0 MLSSNVDPDKFTFASVMPACAKLGSLPQAQWLHTVMIEKRIEVNSILVAAMIDMYSKCGGIDAAKSVFERVQRDNASIWNSMINGFAIHGFALDAIAVFS NMEFEDVSPDSITFLGLLTACSHSGLAKEGRHYFGLMKIRYSLEPEHEHYGALVDLLGRAGFLEEARDVIMSMPIETDVVIWRALLSACRLHKAPEIGKL AIANISRLKGGDYVLLSNIYCSQQKWDSAQRVREMMKKDGVSKKKGISWFEWGGGFHHFKSGDRSHPEIAAVYKVVGGLIEKAKLFGFVPKTELVMMDVS EEEKEENLHHHSEKLALAYGILKTAPGTEIRISKNLRICAPCHSWFRFVSMALNRVILVRDRVRFHRFEGGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10043208 [exp]	0	1
AT5G50990			Tetratricopeptide repeat (TPR)...		Lus10000230 [exp]	1.0	0.9027
AT3G22430			unknown protein		Lus10021917 [exp]	2.4	0.7989
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Lus10020873 [exp]	5.1	0.8106
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10008871 [exp]	8.7	0.7534
AT5G27930			Protein phosphatase 2C family ...		Lus10020670 [exp]	11.8	0.7598
AT5G14890			NHL domain-containing protein ...		Lus10001933 [exp]	12.4	0.7309
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	17.5	0.8087
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	21.1	0.8011
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	21.8	0.7972
AT3G15810			Protein of unknown function (D...		Lus10032602 [exp]	22.4	0.8012

Compare expression of checked genes

Lus10043208 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.