Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61840 746 / 0 GUT1, IRX10-L Exostosin family protein (.1) AT1G27440 716 / 0 ATGUT1, IRX10, GUT2 Exostosin family protein (.1) AT5G22940 288 / 3e-93 F8H FRA8 homolog (.1) AT2G28110 284 / 1e-91 IRX7, FRA8 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) AT5G03795 126 / 1e-31 Exostosin family protein (.1) AT4G16745 124 / 9e-31 Exostosin family protein (.1.2) AT5G11130 121 / 5e-30 Exostosin family protein (.1) AT5G37000 118 / 1e-28 Exostosin family protein (.1) AT5G11610 117 / 1e-28 Exostosin family protein (.1.2) AT4G38040 116 / 1e-28 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032530 [exp] 836 / 0 AT5G61840 773 / 0.0 Exostosin family protein (.1) Lus10043326 [exp] 689 / 0 AT1G27440 735 / 0.0 Exostosin family protein (.1) Lus10019479 [exp] 689 / 0 AT1G27440 731 / 0.0 Exostosin family protein (.1) Lus10041343 [exp] 280 / 7e-90 AT2G28110 608 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10037376 [exp] 233 / 2e-72 AT2G28110 501 / 5e-177 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Lus10001917 [exp] 122 / 4e-30 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10039142 [exp] 120 / 2e-29 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10001958 [exp] 116 / 3e-29 AT5G25310 372 / 1e-127 Exostosin family protein (.1) Lus10013790 [exp] 119 / 6e-29 AT5G03795 602 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109200 [exp] 759 / 0 AT5G61840 752 / 0.0 Exostosin family protein (.1) Potri.012G109600 [exp] 757 / 0 AT5G61840 750 / 0.0 Exostosin family protein (.1) Potri.001G068100 [exp] 723 / 0 AT1G27440 752 / 0.0 Exostosin family protein (.1) Potri.003G162000 [exp] 673 / 0 AT1G27440 705 / 0.0 Exostosin family protein (.1) Potri.015G116700 [exp] 626 / 0 AT5G61840 619 / 0.0 Exostosin family protein (.1) Potri.015G107200 [exp] 297 / 2e-100 AT5G61840 327 / 3e-112 Exostosin family protein (.1) Potri.009G006500 [exp] 300 / 1e-97 AT2G28110 596 / 0.0 IRREGULAR XYLEM 7, FRAGILE FIBER 8, Exostosin family protein (.1) Potri.018G025200 [exp] 132 / 6e-34 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 127 / 4e-32 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.T124607 [exp] 126 / 6e-32 AT5G20260 545 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10043209 pacid=23168152 polypeptide=Lus10043209 locus=Lus10043209.g ID=Lus10043209.BGIv1.0 annot-version=v1.0 ATGGAGATTTGGATCTGGGTCTTCTCTGCAATCCTCTGCCATGCCGCTTTTCTACCGAGGATGGGCTCTGCTGTTGAGCTCGCCAGGACTCAGCCTACCG AGAGGATTTCAGGTAGTGCTGGTGATGTGTTGGATGATGACCCTGTGGGAAGGCTGAAAGTATTTGTTTATGAACTTCCCAGCAAATACAACAAGAAGCT TCTGCAGAAAGACCAGAGATGCCTTAATCACATGTTTGCGGCTGAGATTTATATGCATCGGTTTCTATTATCCAGCCCTGTTCGCACCCTCAATCCCGAG GAAGCTGATTGGTTCTATACTCCTGTATACCCCACTTGTGACTTAACACCCAACGGTCTTCCTTTGCCTTTTAAGTCGCCAAGAATCGTGAGAAGTGCAA TACAGCTGATTGCTTCCAACTGGCCTTATTGGAATCGAACTGAAGGAGCAGATCACTTCTTTGTGGTGCCCCATGACTTTGGACCATGCTTTCATTATCA AGAAGAGAAAGCAATTGAAAGAGGAATTCTTCCTTTGCTTCAACGAGCTACATTGGTCCAAACATTTGGGCAGCGGAATCATGTTTGCTTAAAAGAGGGC TCAATCACAGTTCCTCCATATGCTCCTCCTCAGAAGATGAAATCTCATCTGATCCCCGAGAGTGTTCCAAGATCCATCTTTGTCTACTTCAGAGGATTGT TTTACGATGTGGGAAATGACCCAGAAGGCGGCTATTATGCAAGGGGTGCTCGGGCAGCAGTGTGGGAGAACTTCAAAAACAATCCACTGTTCGACATATC CACAGATCATCCCGTCACATACTACGAAGATATGCAACGGGCGGTGTTTTGTCTGTGTCCGCTCGGATGGGCACCGTGGAGTCCGAGATTGGTCGAGGCG GTGGTGTTCGGTTGTATCCCTGTCATCATAGCCGACGATATTGTTCTGCCCTTTGCTGATGCAATCCCGTGGGAGGAAATCGGGGTGTTTGTCGATGAGA AAGATGTTCCGAACTTGGACACCATCCTAACCTCGATCCCGCCCGAAGTTATACTGAGGAAACAGAGACTGCTGGCTAACCCTTCGATGAAGCAGGCGAT GTTGTTCCCTCAACCGGCTCAACCGGGTGATGCCTTCCATCAAGTTCTGAACGGACTGGCGCGTAAGCTGCCCCATGAGAAGAGTGTGTACTTGAGTCCT GGGGAGAAGGTTTTGAACTGGACTGCTGGTCCTGTTGGTGATCTCAAACCGTGGTAG
AA sequence Show only first row Show all	>Lus10043209 pacid=23168152 polypeptide=Lus10043209 locus=Lus10043209.g ID=Lus10043209.BGIv1.0 annot-version=v1.0 MEIWIWVFSAILCHAAFLPRMGSAVELARTQPTERISGSAGDVLDDDPVGRLKVFVYELPSKYNKKLLQKDQRCLNHMFAAEIYMHRFLLSSPVRTLNPE EADWFYTPVYPTCDLTPNGLPLPFKSPRIVRSAIQLIASNWPYWNRTEGADHFFVVPHDFGPCFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEG SITVPPYAPPQKMKSHLIPESVPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKNNPLFDISTDHPVTYYEDMQRAVFCLCPLGWAPWSPRLVEA VVFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPNLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHEKSVYLSP GEKVLNWTAGPVGDLKPW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10043209 [exp]	0	1
AT3G42950			Pectin lyase-like superfamily ...		Lus10027646 [exp]	2.8	0.9813
AT3G55950		CCR3, ATCRR3	CRINKLY4 related 3 (.1)		Lus10040663 [exp]	3.5	0.9705
AT2G41610			unknown protein		Lus10030172 [exp]	4.5	0.9760
AT1G19170			Pectin lyase-like superfamily ...		Lus10039909 [exp]	5.3	0.9725
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10033156 [exp]	5.7	0.9619
AT4G13930		SHM4	serine hydroxymethyltransferas...		Lus10032592 [exp]	7.0	0.9698
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Lus10006258 [exp]	8.3	0.9745
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	10.6	0.9690
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Lus10043326 [exp]	11.0	0.9709
AT1G13680			PLC-like phosphodiesterases su...		Lus10012600 [exp]	12.2	0.9374

Compare expression of checked genes

Lus10043209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.