Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51020 392 / 3e-139 CAA33, CRL constitutive activator of AAA-ATPase, crumpled leaf (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032529 [exp] 447 / 3e-161 AT5G51020 333 / 3e-116 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10016734 [exp] 431 / 9e-155 AT5G51020 433 / 2e-155 constitutive activator of AAA-ATPase, crumpled leaf (.1) Lus10022429 [exp] 411 / 2e-146 AT5G51020 417 / 2e-148 constitutive activator of AAA-ATPase, crumpled leaf (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G109800 [exp] 418 / 2e-149 AT5G51020 438 / 4e-157 constitutive activator of AAA-ATPase, crumpled leaf (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF06206 [flax] [poplar] CpeT CpeT/CpcT family (DUF1001)
Representative CDS sequence Show only first row Show all	>Lus10043210 pacid=23168102 polypeptide=Lus10043210 locus=Lus10043210.g ID=Lus10043210.BGIv1.0 annot-version=v1.0 ATGGGAACGAGCTCTGGCTCAGATAAGGACGACTCTAATGGATGGGGCAAAACTCAGGGACTGGTGGTGAAGACGCTGATTTTGATCGGAGGTGCCTTTC TGGTGAAGCGGTTTACTAAATCCACTACTCGTTGGGACCATGCTAACCACGTCTCCCAATCGCTCTCCGGTGAAAAGTCCTCGAGGGAGCAAGCATCCAG AGATCCTGATAATTACTTCAACATTAGGACGATTATGTGTCCTGCTGCTGAAATGGTTGATGGTACTAAGGTTTTGTACTTTGAACAGGCATTCTGGCGC AATCCTCAGAAACCCTTTCGGCAAAGGTTCTACATGGTGAAGCCTTGCCCAAAGGAGTTGAAATGTGATGTGGAGGTAAGCACTTATGCGATTAGAGATG CAGATGAGTACCTAAATTTCTGTGATCGGCTGAGGGATCAACGACCACGTCCTGAAGAAGTAATTAGTGGCATTGCAGAACAGCTCAGTACATTACATCT AGAACGATGTGATCGCGGAAAACGCTGCATGTACGAAGGTTCGACGCCTCCTGGAGGATTCCCTAACACATGGAATGACGCCACTTATTGTACCTCGCAA CTGTCCGTATTGAAGAACAACGAAGTGCATATGTGGGACAGGTGTTACGATGATGATGGAAACCAGGTTTGGGGATCAAGGGAAAGTCCTTACGAGTTCA AGCCTGCACCAGGTTTTTCTGGTAGTCTGAATGGGATTTTCTCTTCATTGAACCTCAGTCCTCTAACAAAAAGATAA
AA sequence Show only first row Show all	>Lus10043210 pacid=23168102 polypeptide=Lus10043210 locus=Lus10043210.g ID=Lus10043210.BGIv1.0 annot-version=v1.0 MGTSSGSDKDDSNGWGKTQGLVVKTLILIGGAFLVKRFTKSTTRWDHANHVSQSLSGEKSSREQASRDPDNYFNIRTIMCPAAEMVDGTKVLYFEQAFWR NPQKPFRQRFYMVKPCPKELKCDVEVSTYAIRDADEYLNFCDRLRDQRPRPEEVISGIAEQLSTLHLERCDRGKRCMYEGSTPPGGFPNTWNDATYCTSQ LSVLKNNEVHMWDRCYDDDGNQVWGSRESPYEFKPAPGFSGSLNGIFSSLNLSPLTKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10043210 [exp]	0	1
AT4G31040			CemA-like proton extrusion pro...		Lus10021616 [exp]	3.6	0.8647
AT4G19985			Acyl-CoA N-acyltransferases (N...		Lus10028990 [exp]	5.1	0.8623
AT2G15890		MEE14	maternal effect embryo arrest ...		Lus10012044 [exp]	10.5	0.8106
AT5G14880			Potassium transporter family p...		Lus10014531 [exp]	11.9	0.8166
AT4G31040			CemA-like proton extrusion pro...		Lus10040575 [exp]	13.6	0.8129
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10005425 [exp]	18.1	0.8019
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10037046 [exp]	19.0	0.7712
AT3G07310			Protein of unknown function (D...		Lus10038208 [exp]	21.0	0.7901
AT5G02170			Transmembrane amino acid trans...		Lus10010855 [exp]	21.4	0.7845
AT1G27290			unknown protein		Lus10015767 [exp]	22.5	0.7878

Compare expression of checked genes

Lus10043210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.