Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22740 187 / 3e-52 SDG23, SUVH6 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2) AT2G35160 169 / 9e-46 SGD9, SUVH5 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) AT1G73100 157 / 4e-42 SDG19, SUVH3 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) AT5G04940 145 / 7e-38 SUVH1 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) AT2G24740 144 / 2e-37 SUVH8, SDG21 SU\(VAR\)3-9 HOMOLOG 8, SET domain group 21 (.1) AT5G47160 133 / 1e-34 YDG/SRA domain-containing protein (.1) AT5G47150 128 / 2e-33 YDG/SRA domain-containing protein (.1) AT1G17770 128 / 7e-32 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT5G13960 113 / 6e-27 SDG33, KYP, SUVH4 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) AT4G13460 107 / 8e-25 SET22, SDG22, SUVH9 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032528 [exp] 712 / 0 AT2G35160 218 / 2e-63 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011011 [exp] 221 / 2e-63 AT2G35160 620 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10001011 [exp] 217 / 3e-62 AT2G35160 615 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10040150 [exp] 209 / 6e-60 AT2G35160 568 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10029470 [exp] 157 / 4e-42 AT1G73100 762 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10008681 [exp] 157 / 8e-42 AT1G73100 738 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10026137 [exp] 149 / 6e-39 AT1G73100 757 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Lus10003017 [exp] 136 / 9e-35 AT2G35160 251 / 1e-73 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Lus10011049 [exp] 130 / 8e-33 AT2G22740 255 / 4e-75 SET DOMAIN PROTEIN 23, SU(VAR)3-9 homolog 6 (.1), SU(VAR)3-9 homolog 6 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G083100 [exp] 198 / 1e-55 AT2G35160 676 / 0.0 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.012G115500 [exp] 156 / 2e-42 AT2G35160 172 / 3e-46 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.015G111884 [exp] 154 / 3e-42 AT2G35160 167 / 3e-45 SET DOMAIN-CONTAINING PROTEIN 9, SU(VAR)3-9 homolog 5 (.1) Potri.003G188700 [exp] 155 / 4e-41 AT1G73100 806 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.001G036800 [exp] 152 / 2e-40 AT1G73100 796 / 0.0 SET DOMAIN PROTEIN 19, SU(VAR)3-9 homolog 3 (.1) Potri.016G025300 [exp] 130 / 2e-32 AT5G04940 561 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.006G027600 [exp] 127 / 1e-31 AT5G04940 583 / 0.0 SU(VAR)3-9 homolog 1 (.1), SU(VAR)3-9 homolog 1 (.2) Potri.008G173100 [exp] 121 / 1e-29 AT4G13460 750 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2) Potri.002G237950 [exp] 120 / 3e-29 AT5G13960 709 / 0.0 SET DOMAIN PROTEIN 33, KRYPTONITE, SU(VAR)3-9 homolog 4 (.1) Potri.010G064300 [exp] 119 / 9e-29 AT4G13460 772 / 0.0 SETDOMAIN GROUP 22, SU(VAR)3-9 homolog 9 (.1), SU(VAR)3-9 homolog 9 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [flax] [poplar] SET SET domain CL0178 [flax] [poplar] PUA PF02182 [flax] [poplar] SAD_SRA SAD/SRA domain
Representative CDS sequence Show only first row Show all	>Lus10043211 pacid=23168066 polypeptide=Lus10043211 locus=Lus10043211.g ID=Lus10043211.BGIv1.0 annot-version=v1.0 ATGGGATACACAACTCCTCCGCTGGAGACGGTCAACGAGAAGAAGAAGAGAAAAGGCGGGATGATGACATTCAAATCCGATGCAGCAGAAGAGCGTGCCA ACCACGCTCGGAAGAGAGTCCAAGAAGTCATCAGGCTCTACAGGGAACAACTCGACACTCTGCAGAAGAAGTGCGATGGGAAAAAAGCTTACGACTTATA TCTCGCCGCAGCAACCTTACTCCAACGGGCTGGAATATCCATGGACAGACAAAAAAGACTCCGTTCGATCCCTGGAGTCGAAATTGGTGACAAGTTCCGA TCGAGAGCCGAGATGAAAGTGATCGGACTCCACTGCCAATATATGGCTGGTGCGGATTACAACAATGGGGTAGCTATCAGCATTGTGGCCGGTAAGCGCT ACTCCAACTTGATACTGTCCTCTGACGTTCTTATCTACTCGGGCCATGGAGGGAACCCTAATGTTCAAACGAGCATTGGGGGTTCCATCGCTGACCAGAA GCTTGAGAGAGGGAATCTCGCCCTGGTTAACAGTATGGAATCGAGAAATCCTGTTCGTGTGATTCGATGTTTGAGTTCGAACAGGGCCGATCATCAGGAT AGTGTTTATGTTTACGACGGGTTGTACACTGTGGAGAGTGTGCGGCAGGAAAGAGGGGAGTTTGGGAAGCTGGTGTTTAAGTTCAAGCTGATTCGGATTC CTGGTCAACCTCCTGTCAACATTGCAATTCCGGAAAAGAAGATGGCCAAGAGATTGAAAAGGGAAGAGATACTTGTAAGGAATGACATATCGGAAGGGAA AGAAGGAATTGCTGTGTCGGTTGTGAACGGTTGGGATGATGAGAGGCCGTCCCCTTTCAATTATGTGAATGTAGGATGCTGCGGAAATTCAGTACCGATC AAGTTTCAGTTCGAGGTTTTCAGGACGCAGCAGGATGATGTCAAGTGCTGGGGATTGAGGTCGAGGCAGTATATTCCTTCGGGAAGTTTGATCTGTGAGT ACGTGGGTGAGTACAAGAAGGAAGTGAGGAGCACGGATGAAATCAGGTATCGTCTCGTCATCGGTGGTGTTTCTGGCCGAAAAGGATGCTATTCGATCAT CGATGCGAGTCGATATGGGAATCTTGGAAGATTCATCAACCAGAGCAACATGAATCCGAATCTGAAAGTCGACAAGGTTGACTGTGGGGGTGACGGCTGC AGGGTGCCACGTGTGCTGATATATGCTGCCAAGGATATTCCTCCTCGCCGGGGGATGAGCTTGCAAATGAACTAG
AA sequence Show only first row Show all	>Lus10043211 pacid=23168066 polypeptide=Lus10043211 locus=Lus10043211.g ID=Lus10043211.BGIv1.0 annot-version=v1.0 MGYTTPPLETVNEKKKRKGGMMTFKSDAAEERANHARKRVQEVIRLYREQLDTLQKKCDGKKAYDLYLAAATLLQRAGISMDRQKRLRSIPGVEIGDKFR SRAEMKVIGLHCQYMAGADYNNGVAISIVAGKRYSNLILSSDVLIYSGHGGNPNVQTSIGGSIADQKLERGNLALVNSMESRNPVRVIRCLSSNRADHQD SVYVYDGLYTVESVRQERGEFGKLVFKFKLIRIPGQPPVNIAIPEKKMAKRLKREEILVRNDISEGKEGIAVSVVNGWDDERPSPFNYVNVGCCGNSVPI KFQFEVFRTQQDDVKCWGLRSRQYIPSGSLICEYVGEYKKEVRSTDEIRYRLVIGGVSGRKGCYSIIDASRYGNLGRFINQSNMNPNLKVDKVDCGGDGC RVPRVLIYAAKDIPPRRGMSLQMN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G35160		SGD9, SUVH5	SET DOMAIN-CONTAINING PROTEIN ...		Lus10043211 [exp]	0	1
AT5G53950	NAC	ATCUC2, CUC2, A...	CUP-SHAPED COTYLEDON 2, Arabid...		Lus10005537 [exp]	2.0	0.9959
AT5G01150			Protein of unknown function (D...		Lus10003168 [exp]	3.2	0.9958
					Lus10026293 [exp]	4.2	0.9954
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10018717 [exp]	4.2	0.9916
AT1G65870			Disease resistance-responsive ...		Lus10016231 [exp]	4.5	0.9942
AT5G45980	HD	WOX9B, STPL, WO...	WUSCHEL related homeobox 9B, S...		Lus10013960 [exp]	4.9	0.9951
AT2G02540	ZF_HD	ATHB21, ZFHD4, ...	ZINC FINGER HOMEODOMAIN 3, ZIN...		Lus10010694 [exp]	5.5	0.9911
AT2G17950	HD	WUS1, PGA6, WUS	WUSCHEL 1, WUSCHEL, Homeodomai...		Lus10041909 [exp]	6.0	0.9933
					Lus10021217 [exp]	6.3	0.9924
AT3G05600			alpha/beta-Hydrolases superfam...		Lus10029878 [exp]	6.5	0.9927

Compare expression of checked genes

Lus10043211 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.