Plant FIBer expression Database

Lus10043212 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G23760 237 / 9e-80 unknown protein
AT4G14100 234 / 2e-78 transferases, transferring glycosyl groups (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032527
[exp]
385 / 8e-138 AT3G23760 250 / 6e-85 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G108200
[exp]
251 / 7e-85 AT3G23760 266 / 4e-91 unknown protein
Potri.001G068800
[exp]
249 / 3e-84 AT3G23760 282 / 8e-98 unknown protein
Potri.018G096056
[exp]
191 / 1e-61 AT3G23760 214 / 2e-71 unknown protein
PFAM info
Representative CDS sequence
>Lus10043212 pacid=23167951 polypeptide=Lus10043212 locus=Lus10043212.g ID=Lus10043212.BGIv1.0 annot-version=v1.0
ATGGCTGCCTCTGCTGCTAGTGAATGCATCTCCCTCTACGCCGCCCTTCTCCTCCTCCTGTTCTTAACCTCCTCTTTCTTCACCGCGGAATCCTCACTGG
AAGATCCAACCCCGGCGCCATGGCCTCTCCAATTCCACTCAGTACTCTTCATGAACAAAAGCAACGGCGGAGGCCTCCAAATGATCGACCTCTGGTACGA
CTGGCCCAACGGCCGCAACTTCAACATCATCCGCGACCAACTAGGCGAGTCCGTCAAATACGACGCCGAATGGAACAACGGCACGTCCTTCATATACACC
CTCGGTGGCGACTCCTCCGCCGACCGGGAATGCAAAGTCCTACACCTTGAAGTCGGCATCCTCCGACCTAATTGGCTCGACGGCGCCAATTACCTAGGTC
AGCAATACTTCGACGGCTTCCACTGCAATGTATGGGAGAAGGTCGATTTCATTTGGTACTACGAAGACGTCCTCACCAAACGTCCAGTCCATTGGACTTT
CTACACAGGGTATACTGCTCATGTGATGACATTTGATGTGGGAGCAGTGTTGGATGATGCTGGATGGCAGGCGCCACTGTCCTGCTTCTCCGATAAGCAA
GTGGAGAAAACCAAAACCATTCCTGGTATTGAAACTCTGGCTGGATTTATATCCCTTCTCAGGCTGAACCATAGCAGTATTTGA
AA sequence
>Lus10043212 pacid=23167951 polypeptide=Lus10043212 locus=Lus10043212.g ID=Lus10043212.BGIv1.0 annot-version=v1.0
MAASAASECISLYAALLLLLFLTSSFFTAESSLEDPTPAPWPLQFHSVLFMNKSNGGGLQMIDLWYDWPNGRNFNIIRDQLGESVKYDAEWNNGTSFIYT
LGGDSSADRECKVLHLEVGILRPNWLDGANYLGQQYFDGFHCNVWEKVDFIWYYEDVLTKRPVHWTFYTGYTAHVMTFDVGAVLDDAGWQAPLSCFSDKQ
VEKTKTIPGIETLAGFISLLRLNHSSI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G23760 unknown protein Lus10043212
[exp]
0 1
AT5G36120 atylmg3, CCB3 "cofactor assembly, complex C ... Lus10013424
[exp]
1.4 0.9279
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015111
[exp]
4.2 0.9234
Lus10019876
[exp]
6.3 0.8882
Lus10040882
[exp]
7.5 0.9221
AT3G43720 Bifunctional inhibitor/lipid-t... Lus10008400
[exp]
8.1 0.8970
AT4G11175 Nucleic acid-binding, OB-fold-... Lus10035773
[exp]
8.1 0.9117
AT3G53170 Tetratricopeptide repeat (TPR)... Lus10024893
[exp]
8.4 0.9095
AT3G02450 cell division protein ftsH, pu... Lus10034097
[exp]
9.4 0.9006
AT3G23760 unknown protein Lus10032527
[exp]
9.8 0.9098
AT5G06290 2CPB, 2-CysPrxB... 2-CYS PEROXIREDOXIN B, 2-cyste... Lus10016969
[exp]
9.9 0.9226

Lus10043212 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.