Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13270 227 / 3e-75 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT1G52330 169 / 1e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT2G01080 44 / 5e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G54200 43 / 6e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011095 [exp] 377 / 1e-134 AT4G13270 234 / 3e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10023631 [exp] 307 / 2e-106 AT4G13270 235 / 2e-78 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10024264 [exp] 257 / 4e-87 AT4G13270 210 / 8e-69 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10037534 [exp] 135 / 2e-39 AT1G52330 160 / 2e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10011458 [exp] 135 / 2e-39 AT1G52330 168 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Lus10006764 [exp] 70 / 2e-14 AT3G54200 79 / 5e-18 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10018361 [exp] 66 / 3e-13 AT3G54200 91 / 1e-22 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10020060 [exp] 62 / 2e-11 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10007649 [exp] 59 / 9e-11 AT3G54200 85 / 2e-20 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G159400 [exp] 230 / 7e-77 AT4G13270 228 / 3e-76 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G055000 [exp] 179 / 9e-57 AT1G52330 181 / 1e-57 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.001G180600 [exp] 177 / 3e-55 AT1G52330 192 / 9e-62 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) Potri.002G230400 [exp] 56 / 1e-09 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 55 / 4e-09 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 55 / 5e-09 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 49 / 6e-07 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 45 / 7e-06 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G021934 [exp] 42 / 0.0002 AT2G01080 249 / 2e-83 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein
Representative CDS sequence Show only first row Show all	>Lus10043216 pacid=23168275 polypeptide=Lus10043216 locus=Lus10043216.g ID=Lus10043216.BGIv1.0 annot-version=v1.0 ATGCCATCCAAGTCCGCCACAGCCTCATCGACGGCGGACTCCATCCCCTACGCCGCCCTCCCCGCCGGCTACCCTCCAAACGTCATCCTTCTCCCATACT ACCGTACTCCTCCGCCCAACCCTATCCTACTCTTCCTACGCCGTTGTCTCGCCTTCATCCTAGTCGCAATCCTCCTATCCTCAGCTGTCTTCTTCCTCTA CCCTTCCGATCCGCAAATCAAAGTCGTCCGCGTGGGACTCAACAAAATCCAAATCCACTACTCTCCTAGTCTCACTCTCGACGTATCCTTATCCCTCGCC GTCAGGGTTCGAAACCCGGACTTCTACTCCCTCGACTACGATTACCTTTCGGTTTCGATCGGGTACAGAGGGAGGCAGATTGGATTGGTAAGGTCGGATG GTGGGATCGTTAGCGCCAGAGGATCGTCTTACGTCAACGCCACGCTTGATTTTGACGGCCTCGAGTTCTTTCAGGACGCGTTTTACTTGATCGGGGATTT AGCTAAGGGCGTTGTCCAGTTCGATACGACCACCACGGTGAACGGCGATTTAGGGCTCTTGTTCTTCGAGATTCCTATTGAGGGTAAAGTATCATGTGAG GTTTACGTGAGCACAAACAACCAGACAGTCGTCCGTCAGAATTGCTACCCTCTGGTAAGGAAACCTGTTTTCTCTATGGTACGCTGA
AA sequence Show only first row Show all	>Lus10043216 pacid=23168275 polypeptide=Lus10043216 locus=Lus10043216.g ID=Lus10043216.BGIv1.0 annot-version=v1.0 MPSKSATASSTADSIPYAALPAGYPPNVILLPYYRTPPPNPILLFLRRCLAFILVAILLSSAVFFLYPSDPQIKVVRVGLNKIQIHYSPSLTLDVSLSLA VRVRNPDFYSLDYDYLSVSIGYRGRQIGLVRSDGGIVSARGSSYVNATLDFDGLEFFQDAFYLIGDLAKGVVQFDTTTTVNGDLGLLFFEIPIEGKVSCE VYVSTNNQTVVRQNCYPLVRKPVFSMVR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13270			Late embryogenesis abundant (L...		Lus10043216 [exp]	0	1
AT5G22950		VPS24.1	SNF7 family protein (.1)		Lus10021423 [exp]	4.4	0.8348
					Lus10014959 [exp]	5.9	0.7807
AT1G78680		ATGGH2	gamma-glutamyl hydrolase 2 (.1...		Lus10028143 [exp]	9.5	0.8075
AT5G17570			TatD related DNase (.1)		Lus10021077 [exp]	10.5	0.7919
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	11.5	0.8073
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	11.6	0.8035
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	13.2	0.8291
AT5G42190		SKP1B, ASK2	Arabidopsis SKP-like 2, E3 ubi...		Lus10017281 [exp]	13.3	0.8017
AT1G78310			VQ motif-containing protein (....		Lus10036479 [exp]	18.5	0.7927
AT4G35220			Cyclase family protein (.1)		Lus10019822 [exp]	18.8	0.8039

Compare expression of checked genes

Lus10043216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.