Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24550 607 / 0 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT2G18470 533 / 0 AtPERK4, PERK4 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) AT4G34440 531 / 0 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 506 / 9e-175 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G49270 501 / 9e-170 AtPERK7 proline-rich extensin-like receptor kinase 7, Protein kinase superfamily protein (.1) AT3G24540 489 / 5e-168 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G18810 487 / 1e-164 AtPERK6 proline-rich extensin-like receptor kinase 6, Protein kinase superfamily protein (.1) AT1G70460 449 / 2e-149 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G23540 444 / 3e-147 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT5G38560 437 / 2e-145 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011098 [exp] 773 / 0 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10023645 [exp] 672 / 0 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10024020 [exp] 501 / 8e-172 AT2G18470 591 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10041734 [exp] 493 / 2e-168 AT2G18470 596 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10014318 [exp] 484 / 5e-168 AT2G18470 552 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Lus10042327 [exp] 491 / 2e-166 AT4G34440 560 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10026335 [exp] 479 / 1e-164 AT4G34440 542 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10040467 [exp] 452 / 1e-152 AT4G34440 501 / 7e-172 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Lus10003066 [exp] 450 / 1e-149 AT5G38560 707 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081300 [exp] 657 / 0 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.001G183000 [exp] 543 / 0 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.003G053301 [exp] 534 / 0 AT1G52290 531 / 0.0 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) Potri.005G124400 [exp] 526 / 0 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.004G153600 [exp] 526 / 4e-180 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.009G115200 [exp] 522 / 7e-179 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) Potri.007G027000 [exp] 519 / 8e-178 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.006G242800 [exp] 473 / 1e-158 AT3G24550 449 / 6e-149 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.008G111600 [exp] 450 / 2e-149 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.008G189700 [exp] 441 / 4e-146 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043219 pacid=23167939 polypeptide=Lus10043219 locus=Lus10043219.g ID=Lus10043219.BGIv1.0 annot-version=v1.0 ATGTCAACTCCGGCGCCCACCTCCCCCCCTTCCACCAACACCACTTCCCCTCCTCCGGCAACCCCCTCCGCCCCTCCTCCGGCAACTCCTTCCGCCCCTC CTCCATCTCCTCCTACATCCTCGCCACCTCCCGTCACTCCTCCTCCCGCTACATCCCCGCCTCCAACGCCGTCAACAACTCCTTCTCCTCCTTCTCCCGA CATACCACCGCCATCTACTCCTTCTCCTCCTTCAACCACCTCGCCGCCGTCTAATCCCACCCCTCTTACTCCGTCAGCGCCTGACACTCGTACCCGTCCC TCTACGGGGTCGCCGCCTTCTTCCCCCGCCGGTGGCAGCTCTCCGCCGAATTCTTCCTCTCCTCCTTCTTCCGGGGGGATATCGACCGGATTGGTGGTTG GGATTGCAATCGGGGGAGTGTTGCTCCTGTTGCTGCTCGTGGGGCTGTGTATTTGCCGTAAGAGAAGGAGAAGAGGCGATCACGAAGCTGCTTACTACGC TCCTCCTCCTCCTCCGCCTCCTTCTGGCCCTAAAGATCATGTTGTGGGAGCAATACCAAAGCCGCCGTCTCATTCGCCGCCGCCACCTCCGCCGCACGGT TACATGAGCAGCAGTGGGGCTTCTAACTACTCCGGTTCCGAAACGCCGCTGCCACCACCTTCCCCTGGGATGGCTTTGGGTTTCTCCAAGAGCACGTTTA CCTACGAGGAGCTAGCAAGGGCGACGGATGGCTTCTCAGAAGCAAACTTACTAGGACAAGGTGGGTTTGGGTATGTTCATAGAGGAGTCCTTCCAAATGG CAAGGAGGTGGCTATCAAGCAGCTGAAAGCAGGGAGTGGGCAAGGGGAGAGGGAGTTCCAAGCCGAGGTGGAGATCATCAGCCGCGTTCATCACAAGCAT CTCGTTTCCTTGGTTGGTTACTGCATCACTGGCTCTGAGAGATTGCTTGTTTACGAGTTTGTACCAAACAACACCTTGGAGTTCCATTTGCATGCGAAAG GGCGACCTACTATGGAATGGCCGGCTAGGTTGAGAATTGCGTTGGGTTCTGCTAAAGGGCTTGCGTATCTCCATGAAGATTGTCATCCTAAGATCATTCA TCGTGACATCAAGTCGGCCAATATACTTTTGGATTTCAAGTTCGAGGCCATGCATACTGGATATGTTTATCATCTTAACAGAGAATTGTTCGCTTTCTCG ATGAACATCACCAATCCTCAGGTTGCTGATTTTGGATTAGCAAAGTTTTCATCTGATACCAACACCCATGTCTCCACCAGGGTGATGGGAACGTTTGGAT ATATGGCTCCGGAGTATGCTTCTAGTGGAAAACTGACCGAGAAGTCCGATGTTTTCTCCTTTGGCGTAATGCTTCTAGAGTTAATCACAGGAAGGCGCCC AGTTGACACAACCCACACTTACATGGATGACAGTCTTGTGGACTGGGCGCGACCTTTACTTTCACGGGCTCAAGAGGATGGAAACTACGATGTTTTGGTC GATCCAAAGCTTCAAGACAACTACGACCACAACGAGATGACTCGCATGGTTGCTTGTGCAGCTGCTTGCATTCGCCATTCTGCAAGGCGTAGGCCCCGCA TTAGTCAGGTAGTCAGAGCTCTGGAAGGAGATGTATCGCTAGCGGACCTGAACGAAGGAATGAAACCAGGGGACAGCCGGGGGTATGGTTCGTATGGAAG CTCGGACTATGACACAAGCCAGTACAACGAGGACATGAGAAAGTTCAGGAAGATGGCACTTGGGAGCCAAGAGCATGGTGGGGTAAGCAGCGAGTACAGT GCTGCACCGACGACGAGTGAGTATGGTCTGAATCCGTCCGGTTCGAGCAGTGAAGGGAAGATAACAACGAGGGAGATGGAAATGGAAATGGGGAAGATGG GTGGTTTCAGTTGA
AA sequence Show only first row Show all	>Lus10043219 pacid=23167939 polypeptide=Lus10043219 locus=Lus10043219.g ID=Lus10043219.BGIv1.0 annot-version=v1.0 MSTPAPTSPPSTNTTSPPPATPSAPPPATPSAPPPSPPTSSPPPVTPPPATSPPPTPSTTPSPPSPDIPPPSTPSPPSTTSPPSNPTPLTPSAPDTRTRP STGSPPSSPAGGSSPPNSSSPPSSGGISTGLVVGIAIGGVLLLLLLVGLCICRKRRRRGDHEAAYYAPPPPPPPSGPKDHVVGAIPKPPSHSPPPPPPHG YMSSSGASNYSGSETPLPPPSPGMALGFSKSTFTYEELARATDGFSEANLLGQGGFGYVHRGVLPNGKEVAIKQLKAGSGQGEREFQAEVEIISRVHHKH LVSLVGYCITGSERLLVYEFVPNNTLEFHLHAKGRPTMEWPARLRIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDFKFEAMHTGYVYHLNRELFAFS MNITNPQVADFGLAKFSSDTNTHVSTRVMGTFGYMAPEYASSGKLTEKSDVFSFGVMLLELITGRRPVDTTHTYMDDSLVDWARPLLSRAQEDGNYDVLV DPKLQDNYDHNEMTRMVACAAACIRHSARRRPRISQVVRALEGDVSLADLNEGMKPGDSRGYGSYGSSDYDTSQYNEDMRKFRKMALGSQEHGGVSSEYS AAPTTSEYGLNPSGSSSEGKITTREMEMEMGKMGGFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10043219 [exp]	0	1
AT3G24550		ATPERK1	proline-rich extensin-like rec...		Lus10011098 [exp]	1.0	0.9598
AT2G39650			Protein of unknown function (D...		Lus10000956 [exp]	1.4	0.9527
AT1G21326			VQ motif-containing protein (....		Lus10029768 [exp]	13.6	0.9197
AT1G68340			Protein of unknown function (D...		Lus10027232 [exp]	19.9	0.9517
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10006718 [exp]	30.6	0.9412
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	31.7	0.9122
AT1G21380			Target of Myb protein 1 (.1)		Lus10029739 [exp]	32.4	0.9160
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	33.2	0.9254
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	38.2	0.9167
AT2G46620			P-loop containing nucleoside t...		Lus10008834 [exp]	38.6	0.9401

Compare expression of checked genes

Lus10043219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.