Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20120 323 / 2e-113 COV1 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) AT2G20130 318 / 1e-111 LCV1 like COV 1 (.1) AT2G18460 300 / 4e-104 LCV3 like COV 3 (.1) AT1G43130 283 / 2e-97 LCV2 like COV 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011099 [exp] 343 / 5e-121 AT2G20120 392 / 4e-139 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Lus10028563 [exp] 295 / 2e-102 AT1G43130 405 / 1e-144 like COV 2 (.1) Lus10014314 [exp] 291 / 3e-99 AT2G18460 379 / 3e-132 like COV 3 (.1) Lus10028564 [exp] 286 / 1e-98 AT1G43130 405 / 2e-144 like COV 2 (.1) Lus10018869 [exp] 286 / 1e-98 AT1G43130 408 / 1e-145 like COV 2 (.1) Lus10026023 [exp] 289 / 2e-98 AT2G18460 378 / 5e-132 like COV 3 (.1) Lus10018868 [exp] 280 / 1e-95 AT1G43130 387 / 1e-136 like COV 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082100 [exp] 337 / 8e-119 AT2G20120 412 / 2e-147 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.006G158100 [exp] 334 / 1e-117 AT2G20120 409 / 5e-146 CONTINUOUS VASCULAR RING, Protein of unknown function (DUF502) (.1) Potri.005G124100 [exp] 291 / 1e-100 AT2G18460 365 / 2e-128 like COV 3 (.1) Potri.002G065800 [exp] 276 / 4e-95 AT1G43130 407 / 2e-145 like COV 2 (.1) Potri.005G148000 [exp] 269 / 4e-92 AT1G43130 319 / 2e-110 like COV 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04367 [flax] [poplar] DUF502 Protein of unknown function (DUF502)
Representative CDS sequence Show only first row Show all	>Lus10043220 pacid=23168283 polypeptide=Lus10043220 locus=Lus10043220.g ID=Lus10043220.BGIv1.0 annot-version=v1.0 ATGACAGGATGTGTAATCCTCTTCCCAATTGCTATTACTTTCTACATAACATGGTGGTTTATTCACTTTGTGGATGGATTTTTCTCTCCAATCTATGCTC AACTTGGAATCAATATCTTTGGTCTCGGATTCGTTACTTCAATTACGTTCATTTTCGTTGTTGGAGTATTCATGTCATCATGGTTGGGGGCATCAGTCCT GAGCCTTGGAGAATGGTTTATCAAAAGGATGCCTTTTGTCCGCCATATCTATAATGCTTCAAAGCAAATTGGTGCTGCCATATCACCAGATCAGAACACA CAAGCTTTTAAGGAAGTAGCCATCATAAGACATCCACGTATTGGTGAATATGCATTTGGTTTCATAACATCCTCGGTCACCCTCCAGAACTATGCTGGAG ACGAAGAGCTCTGCTGCGTTTATGTTCCGACAAATCACCTATACATTGGTGATATATTCCTGGTCAGTGCAAATGATGTGATCAGACCTAATCTCTCAGT GAGGGAAGGAATAGGTGAGGAGGATTCCCTTGAATATTATGTTACATGA
AA sequence Show only first row Show all	>Lus10043220 pacid=23168283 polypeptide=Lus10043220 locus=Lus10043220.g ID=Lus10043220.BGIv1.0 annot-version=v1.0 MTGCVILFPIAITFYITWWFIHFVDGFFSPIYAQLGINIFGLGFVTSITFIFVVGVFMSSWLGASVLSLGEWFIKRMPFVRHIYNASKQIGAAISPDQNT QAFKEVAIIRHPRIGEYAFGFITSSVTLQNYAGDEELCCVYVPTNHLYIGDIFLVSANDVIRPNLSVREGIGEEDSLEYYVT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20120		COV1	CONTINUOUS VASCULAR RING, Prot...		Lus10043220 [exp]	0	1
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10020245 [exp]	3.9	0.9498
AT4G32180		ATPANK2	pantothenate kinase 2 (.1.2.3)		Lus10013019 [exp]	3.9	0.9557
AT3G04970			DHHC-type zinc finger family p...		Lus10033823 [exp]	4.5	0.9490
AT2G44420			protein N-terminal asparagine ...		Lus10020880 [exp]	4.9	0.9544
AT3G04970			DHHC-type zinc finger family p...		Lus10018967 [exp]	9.9	0.9441
AT4G24740		AME1, AFC2	FUS3-complementing gene 2 (.1....		Lus10019458 [exp]	11.0	0.9424
AT4G37180	GARP		Homeodomain-like superfamily p...		Lus10019639 [exp]	12.6	0.9427
AT3G13970		APG12B, APG12	AUTOPHAGY 12 B, AUTOPHAGY 12, ...		Lus10006527 [exp]	13.0	0.9328
AT5G22050			Protein kinase superfamily pro...		Lus10004110 [exp]	13.2	0.9328
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	14.7	0.9434

Compare expression of checked genes

Lus10043220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.