Plant FIBer expression Database

Lus10043221 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G24630 81 / 2e-15 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011100
[exp]
1265 / 0 AT3G24630 66 / 7e-11 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G082300
[exp]
223 / 1e-61 AT3G24630 99 / 4e-21 unknown protein
Potri.002G261700
[exp]
44 / 0.0007 AT5G42710 185 / 4e-48 unknown protein
PFAM info
Representative CDS sequence
>Lus10043221 pacid=23168114 polypeptide=Lus10043221 locus=Lus10043221.g ID=Lus10043221.BGIv1.0 annot-version=v1.0
ATGTACAGACCATTTGTCACTTGTGAAGATCCCAAAGGTGTAGTTGAATGTGGGACAATCAGGAAGTCCAGCCATAGACATAAAAAGAAGAAGAATTCCG
CTGGAGGAGGGGAGCACCACCATCCAAATCCATCCTCATTTCAGCTCATGGAGGTCTCAAAGGGAGCTAAGAAGCTGATGAACAAGGTAATGATTAATGA
ACAACATGGGTCGTCTAAGGAGAGTATGGCTGAGGATTTTCTCAAGGGAGCTCTTCATTTGAAAGATTCATTGGTAATGCTTGGGAAGTTGCAAGATGCT
TCTGACTACATGGCTAAGTTGAAGCAGCAGAAACAGTTGAAGGAGAGGGAAAGAAGGGTTATTGTTGATGATGATGATGATGATGGGTTTCCTTCAGTGA
TGAGGAGGGCTACGTCATGTAGAGAACAAGATCCAAACTTTCAGATGATGGGGTTTCAAAGGCCAAGGCTTTCAGTTGATGGAGGAGGGGATTACATTGA
TGAGCTAAGGATGGCAATTACTGACAGCTTTGATAGGCAGAACTTGCTTTCAGTTGAGGAAAGGGCTTCTTTGCTTTACAGGAGAAGAAGAGATCAGGAG
GAGTCAATGACTAAATCCAGTGATCAAACATTATCAAAGGTGGTAGAGAAGAAGAAGGACAAGAGTTCTTCTACTTCTTCAAATGTGATTGCCAGATTGA
TGGGATTGGAAGATATCCTGCCTCCTGAATCACCACCGAAGCGGATGGACATTGGCGTACCAAACTCGAATGTCAGGAAGCCGAAGCAGAAGAAAGACGA
TTACTTTTTCAACATGAAGGAAGCTGAGACACAGCAAAGGAGCCTAAAGGAGCTTCTTGAGACAATGGAATTCAGAGGGCTTCTGAAGAAGAGCACTTCT
GTGAAGAAGTACACTACTCAGCAGTTATTGCCTGAAGGGGTTCCCCCAGTTGTCCTCATAAAGCCCTTTTACATGCCTGAATCAGAATTCAGTACTAGTG
AGGATGAATTTTTGCGCTCAAATGATGTGATTATGAGAAAGGTGGAAGCAAAAGATGAAACCTTTACCCCTGGAAGGAGTTACCAAGAAAGAAGGGCCAA
GAATTTGAGTAGAAGGATTGGGAAGGAAGAGGAACAAGTTAAAACAGTTGTGCAGAGAGAAGGTCATGTGAAGGGAAAAAACAGGATGCCAAGAGAAGAT
GCTGGAGGGAAATCGGCTACTGGCAAAAATCGATCTTGTAAGGAACAGAAGGAGGTAGTTCAAAGGGTGAAAGACGGTGTACTTAAAAGTAATGCTAAGG
TCATTGTGGACAAGACTCAGAAGGCGGTGAACGAAGTACCGGAAGTGAAGGAGACTTTGAAGGTTAGAAATGGATCTGCAAGAGTTGAGGATAATAAAAC
CAAAGTACCAACCTTTAGAGAAGTGAGGGATTCTGCAAGTGGAAGAATTGGTTCAAGGAGTCAAAGAGTTGAGCAGCAAAGTGGAACTCGTAATGCCAAA
GCCAAGAAGAAGAGAAAGAATGAGGAACAGAAAGTGAAGCTGGTGGATGAGGTGAAAGAAAAAATAACAAAGGTGAGTCCTCCTTTACTTTATCACTCTG
CAGTTCAACAAATTGTGGCAGATCAGAAACTTAATTTTGCTTCATCGTTGAAACAGTCTGTACATAAGCCTGAACATAAGAAAGTTGATCTCATTGAACC
TGTTGTTGAAGGAAGTATCCCTATTACTTCAGGTTCACAGCAGAAATATAGCGAAGAAGAAACAAATTCATCTGCATTTCCACCTGAAGAACATAGTACT
GAAACCTATAGCTCTCCTACACCAGAATGTGGAAAGCATATTCAGTTGAAAACCAGTAAAGCAGAAGACAGCAACTTGAGAGGTAGAATACAATTCAAAA
CCTTCCTCTTAAGCAGCCAAGGGTTTCTCATCCGCACAGAGCAGCAGCTCTTCCCTCTCCCAATTCCAAACACCTTATTACCAGTGTCTAGAATAAACGA
TTCCGAGACATCATTATGTACGAAACTGTCGTTAGACTACGCAAATGAACTCATCGAATGCAGGCCGAGTAGCACTATTCCAGACTGGCAAGCAAGAAGT
CGTTATTATTGTATGCTTCCTCCATCTTGTGCATCACTTGATGATGATAATATAGATGAGGTGGTGGAACAAGTCTGCAATGGCATCGACGAACTAAAGC
ACTACCATATGCTCAACAGTGTGAGCGCTATACTGGAAAGAGACTTGAAGAGCATAGGAGTGATGGTGAGCCGGGTGTGGGAATCGGGTTGGAGGGACGG
ATTATGTACTGAAGAAGCTGAAGAAGCTGTGTCTAAATTAGAGAAATTGATTCTTGACCACTTGATTGAGGAGGTATTCACTTGA
AA sequence
>Lus10043221 pacid=23168114 polypeptide=Lus10043221 locus=Lus10043221.g ID=Lus10043221.BGIv1.0 annot-version=v1.0
MYRPFVTCEDPKGVVECGTIRKSSHRHKKKKNSAGGGEHHHPNPSSFQLMEVSKGAKKLMNKVMINEQHGSSKESMAEDFLKGALHLKDSLVMLGKLQDA
SDYMAKLKQQKQLKERERRVIVDDDDDDGFPSVMRRATSCREQDPNFQMMGFQRPRLSVDGGGDYIDELRMAITDSFDRQNLLSVEERASLLYRRRRDQE
ESMTKSSDQTLSKVVEKKKDKSSSTSSNVIARLMGLEDILPPESPPKRMDIGVPNSNVRKPKQKKDDYFFNMKEAETQQRSLKELLETMEFRGLLKKSTS
VKKYTTQQLLPEGVPPVVLIKPFYMPESEFSTSEDEFLRSNDVIMRKVEAKDETFTPGRSYQERRAKNLSRRIGKEEEQVKTVVQREGHVKGKNRMPRED
AGGKSATGKNRSCKEQKEVVQRVKDGVLKSNAKVIVDKTQKAVNEVPEVKETLKVRNGSARVEDNKTKVPTFREVRDSASGRIGSRSQRVEQQSGTRNAK
AKKKRKNEEQKVKLVDEVKEKITKVSPPLLYHSAVQQIVADQKLNFASSLKQSVHKPEHKKVDLIEPVVEGSIPITSGSQQKYSEEETNSSAFPPEEHST
ETYSSPTPECGKHIQLKTSKAEDSNLRGRIQFKTFLLSSQGFLIRTEQQLFPLPIPNTLLPVSRINDSETSLCTKLSLDYANELIECRPSSTIPDWQARS
RYYCMLPPSCASLDDDNIDEVVEQVCNGIDELKHYHMLNSVSAILERDLKSIGVMVSRVWESGWRDGLCTEEAEEAVSKLEKLILDHLIEEVFT

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G24630 unknown protein Lus10043221
[exp]
0 1
AT5G59020 Protein of unknown function (D... Lus10040721
[exp]
2.0 0.8800
AT2G24370 Protein kinase protein with ad... Lus10026989
[exp]
5.5 0.8703
AT1G21830 unknown protein Lus10018177
[exp]
9.0 0.8699
AT3G44610 Protein kinase superfamily pro... Lus10043435
[exp]
9.9 0.8612
AT3G59110 Protein kinase superfamily pro... Lus10001055
[exp]
13.0 0.8665
AT1G79420 Protein of unknown function (D... Lus10001843
[exp]
16.7 0.8606
AT1G29200 O-fucosyltransferase family pr... Lus10007290
[exp]
17.0 0.8655
AT4G14220 RHF1A RING-H2 group F1A (.1) Lus10034049
[exp]
19.4 0.7922
AT4G37680 HHP4 heptahelical protein 4 (.1.2) Lus10011713
[exp]
21.1 0.8568
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Lus10043408
[exp]
22.1 0.8547

Lus10043221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.