Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11520 723 / 0 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT5G19550 718 / 0 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT1G62800 635 / 0 ASP4 aspartate aminotransferase 4 (.1.2) AT4G31990 471 / 4e-165 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT2G30970 437 / 6e-152 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011101 [exp] 837 / 0 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 729 / 0 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10001938 [exp] 491 / 7e-173 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10029796 [exp] 431 / 9e-150 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 429 / 6e-149 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 357 / 7e-121 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10001753 [exp] 335 / 5e-112 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10000181 [exp] 215 / 3e-66 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082500 [exp] 753 / 0 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 732 / 0 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G241500 [exp] 657 / 0 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G260200 [exp] 485 / 2e-170 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G022200 [exp] 480 / 2e-168 AT4G31990 799 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.014G143300 [exp] 422 / 2e-146 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 394 / 5e-135 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00155 [flax] [poplar] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Lus10043222 pacid=23168048 polypeptide=Lus10043222 locus=Lus10043222.g ID=Lus10043222.BGIv1.0 annot-version=v1.0 ATGACTTCCGATTCCGTTTTCGCCGCCGTCGTTCGTGCTCCCGAAGATCCCATCCTCGGGGTGACCGTTGCTTACAACAAGGACACCAGCCCAAACAAGG TGAATTTGGGCGTCGGTGCTTACCGGACAGAGGAAGGAAAGCCTCTTGTTCTCAATGTTGTTCGAAAAGCGGAGCAGATTTTGGTGAATGACAAGTCTGG CATCAAGGAGTATCTTCCCATCACTGGTCTAGCAAACTTCAACAAGCTGAGTGCCAAGCTCATCCTTGGATCTGACAGCCCAGCCATACAAGACGACAGA GTGACAACGGTCCAGTGCTTATCTGGTACTGGTTCTTTGAGGGTCGGAGGTGAATTTCTCGCTAGACATTATCATGAGCACACTATCTACATTCCAAAAC CAACGTGGGGAAATCATCCGAAGATCTTCACTCTCGCTGGGTTGTCTGTGAAAACTTACCGCTACTATGACCCTGCAACGAAGGGCCTGGACTTTCAAGG ATTGCTGGAGGATCTCGGATCTGCACCATCAGGAGCTATAGTGCTTCTTCATGCGTGTGCTCACAACCCAACGGGTGTTGACCCAACCCTCGAGCAGTGG GAACAGATTAGACAGTTGATTAGATCGAAACAGTTGTTGCCCTTTTTTGACAGTGCTTACCAGGGATTTGCCAGTGGTAGCCTTGATGCTGATGCCCAAT CCGTTAGAATGTTTGTTGCGGATGGTGGTGAATGTCTTGCGGCGCAAAGTTATGCCAAAAACATGGGACTTTATGGGGAACGTGTCGGTGCCCTCAGCAT TGTCTGCAAGACAGCCGATGTGGCAAGCAGAGTTGAGAGTCAATTGAAACTTGTGATCCGGCCAATGTATTCCAGCCCACCTATCCATGGTGCAGCTATA GTTGCAACAATTCTGAAAGACAGTAACCTGTATGAAGAGTGGACCTTGGAGCTTAAAGCCATGGCTGACAGAATCCTAAGCATGCGTCAGCAACTTTTCG ACGCTTTATCTACCAGAGGTACTCCAGGTGACTGGAGCCACATCCTGAAGCAAATTGGTATGTTTACTTTCACCGGTCTCAACTCGGAACAAGTTGCCTT TATGACAAAAGAGTACCACATTTACATGACATCTGATGGGAGGATAAGCATGGCTGGTCTGAGTTCAAGTACAGTAGGTCATCTTGCAGATGCGATACAT GCTGCAGTCACCCATTCCGGTCCCGCGTAG
AA sequence Show only first row Show all	>Lus10043222 pacid=23168048 polypeptide=Lus10043222 locus=Lus10043222.g ID=Lus10043222.BGIv1.0 annot-version=v1.0 MTSDSVFAAVVRAPEDPILGVTVAYNKDTSPNKVNLGVGAYRTEEGKPLVLNVVRKAEQILVNDKSGIKEYLPITGLANFNKLSAKLILGSDSPAIQDDR VTTVQCLSGTGSLRVGGEFLARHYHEHTIYIPKPTWGNHPKIFTLAGLSVKTYRYYDPATKGLDFQGLLEDLGSAPSGAIVLLHACAHNPTGVDPTLEQW EQIRQLIRSKQLLPFFDSAYQGFASGSLDADAQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKTADVASRVESQLKLVIRPMYSSPPIHGAAI VATILKDSNLYEEWTLELKAMADRILSMRQQLFDALSTRGTPGDWSHILKQIGMFTFTGLNSEQVAFMTKEYHIYMTSDGRISMAGLSSSTVGHLADAIH AAVTHSGPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10043222 [exp]	0	1
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10011101 [exp]	1.0	0.9353
AT5G46630			Clathrin adaptor complexes med...		Lus10030961 [exp]	1.4	0.9014
AT3G52710			unknown protein		Lus10014206 [exp]	3.9	0.8467
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Lus10041857 [exp]	8.7	0.8777
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10007370 [exp]	8.8	0.8710
AT3G53390			Transducin/WD40 repeat-like su...		Lus10019930 [exp]	13.3	0.8784
AT4G08960			phosphotyrosyl phosphatase act...		Lus10011297 [exp]	14.9	0.8817
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035655 [exp]	17.5	0.8508
AT5G27490			Integral membrane Yip1 family ...		Lus10031511 [exp]	18.3	0.8305
AT1G49960			Xanthine/uracil permease famil...		Lus10034125 [exp]	22.2	0.7554

Compare expression of checked genes

Lus10043222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.