Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32230 425 / 4e-139 PRORP1 proteinaceous RNase P 1 (.1) AT2G16650 350 / 4e-111 PRORP2 proteinaceous RNase P 2 (.1) AT4G21900 346 / 8e-109 PRORP3 proteinaceous RNase P 3 (.1) AT5G24310 81 / 1e-16 ABIL3 ABL interactor-like protein 3 (.1.2) AT5G42030 80 / 4e-16 ABIL4 ABL interactor-like protein 4 (.1) AT3G49290 75 / 3e-14 ABIL2 ABL interactor-like protein 2 (.1.2) AT2G46225 69 / 2e-12 ABIL1, ABI1L1 ABI-1-like 1 (.1.2.3) AT5G60430 64 / 2e-11 drug transmembrane transporters;antiporters (.1.2) AT1G13040 66 / 5e-11 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G16890 50 / 5e-06 PPR40 pentatricopeptide (PPR) domain protein 40 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039049 [exp] 429 / 1e-140 AT2G32230 627 / 0.0 proteinaceous RNase P 1 (.1) Lus10038809 [exp] 419 / 5e-137 AT2G32230 615 / 0.0 proteinaceous RNase P 1 (.1) Lus10038817 [exp] 354 / 5e-113 AT2G32230 555 / 0.0 proteinaceous RNase P 1 (.1) Lus10019535 [exp] 340 / 8e-107 AT4G21900 607 / 0.0 proteinaceous RNase P 3 (.1) Lus10014928 [exp] 307 / 4e-95 AT2G32230 503 / 1e-174 proteinaceous RNase P 1 (.1) Lus10011102 [exp] 269 / 6e-77 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10043379 [exp] 235 / 2e-70 AT4G21900 369 / 7e-125 proteinaceous RNase P 3 (.1) Lus10023654 [exp] 152 / 6e-41 AT5G42030 91 / 3e-21 ABL interactor-like protein 4 (.1) Lus10034928 [exp] 138 / 1e-37 AT5G42030 87 / 4e-21 ABL interactor-like protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160300 [exp] 566 / 0 AT2G32230 404 / 1e-130 proteinaceous RNase P 1 (.1) Potri.017G144900 [exp] 440 / 7e-145 AT2G32230 671 / 0.0 proteinaceous RNase P 1 (.1) Potri.004G074100 [exp] 435 / 6e-143 AT2G32230 662 / 0.0 proteinaceous RNase P 1 (.1) Potri.009G145200 [exp] 349 / 4e-110 AT2G16650 568 / 0.0 proteinaceous RNase P 2 (.1) Potri.004G185200 [exp] 335 / 9e-105 AT2G16650 573 / 0.0 proteinaceous RNase P 2 (.1) Potri.018G082600 [exp] 117 / 3e-29 AT2G46225 94 / 1e-22 ABI-1-like 1 (.1.2.3) Potri.012G016900 [exp] 80 / 7e-16 AT3G49290 353 / 5e-122 ABL interactor-like protein 2 (.1.2) Potri.002G165900 [exp] 72 / 2e-13 AT2G46225 397 / 5e-140 ABI-1-like 1 (.1.2.3) Potri.001G088100 [exp] 70 / 1e-12 AT3G49290 265 / 9e-88 ABL interactor-like protein 2 (.1.2) Potri.014G092300 [exp] 69 / 2e-12 AT2G46225 396 / 1e-139 ABI-1-like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat CL0280 [flax] [poplar] PIN PF11977 [flax] [poplar] RNase_Zc3h12a Zc3h12a-like Ribonuclease NYN domain
Representative CDS sequence Show only first row Show all	>Lus10043223 pacid=23168027 polypeptide=Lus10043223 locus=Lus10043223.g ID=Lus10043223.BGIv1.0 annot-version=v1.0 ATGGCCTCTTGCTCCACGGCATCCATGTTCAGCTGCTCCAAACAACACTTTCTATCCACGACCTTTCCCCATTCCAAGTTTCCATACAGCCAAGTCTCCT CACACAATCACACACCTTCCTCAAATGCTAAACCCAAGTCGCCGCTCCCCAGAAGCCACCAAGTTTGGAGGAGAACCAGAAACAGAAACGATTCCGGATC CTCGTCTCCCCTTATTTCAGAGAAAAGGATCGACAGCCAGTCTGCCAAAGAGCTTGTCAGTAATTTCGAGATACCCGACGAGGGTACAAGTAAGAGAACT GATGGTGATGAAATGGAGAAACCGTATTATAAGAAGAAGAGCAAGGCTGTTCAGAGGCGGATTCAGTTGGACATGTGCTCCAGAAGAGGAGACGTCATGG GAGCGATTGAACTCTACGATTCGGCAAATGAGGAAGGAATCGCTATGACGCTGTATGAGTATTCCGTAATTCTCTATCTTTGTTCTTCTGCTGCCGTTGG AGTTGTTCAACCGGCCAAGAGCGGGACATGTAATAATGCAGGCCAGGTGTTTGATGAAAGCTCACAGGCAAGCGATGGCGTAATTCAGGTAAGTGAAGAT GTCAGGAACTACGCGCTTCAGAAGGGATTAGAAATCTACGAAAGCATGCGTCTCCGCAATGTGCCGATGAACGAAGCAACCTTAACTGCCGTGGCTAGGA TGGCTATGTCGACGGGGGATGGGGACATGGCGTTCGATATGGTGAAGCAGATGACTCAGTTGGGGATAACTCCTAAACTAAGATCATACGTTCCTGCTCT GACTGCATACTGTGGAAGTAAAGATGTTGAGAAAGCGTTCAGCGTGGAAAATCACATGTTGGAGCATGGCGTGTCACCAGAAGCTTCAGAACTTGAGGCG TTGTTGAGAGTCAGTGTGGAAGCTGGTGGTAAAGGCGATAAGGTGTATTACTTGTTGCATAATCTCAGAACTAGTGTACGGAGGGTCTCACCTTCCACTG CTGATATAATCGTTAGCTGGTTTAGTAGCAATACAGCTTCCAGAGTGGGGAAAAGGAAATGGTCTGAACTACATATCAAAGAGGCCATAGAAAATGGAGG TGGAGGTTGGCATGGGAAAGGCTGGTTAGGGAAAGGAAAGTGGAGAGTTTCTTATACAACTGTTGGACCAGATGCATCTTGTAGATGTTGTGGAGACAAA CTGGCCACGGTTGACCTTGATCCCGCAGAAACGGAGAATTTTGCGGAATCAGTTGCTTCGATTGCTCTTAAGAGCGATAAAGATTCGAGATTTGTGAAGT TTCAAAAATGGCTAGATCATCATGGACCATTTGAAGTTGTGGTGGATGGAGCTAATGTTGGACTTTCCTGCAATAAGAAGTTTATCGTAGCCAAGGTCAA TGCCGTTTGGGATGGCCTGCGGAAAAAATTTCCTTCTCACAAACGGCCACTCATAATATTGTACAGTAGGCGCATGTCTGGAATGACTGGGCGAAAGCAC GAGGCACTCTTGAAGAAGTGGCGAAATGCCAGTGCACTCTTTACATCACCTACTGGATCCAATGACGATTGGTACTGGTTATATGCAGCTATAAAGTTCA AGAGCTTAATTGTAACAAATGATGAGATGAGAGACCATAGTTTCCAACTTCTGGGAAATGACTTTTTCCCCAAGTGGAAAGAGAGGCATCAAGTGCGGTT TTGTTTTGACGGGACTGATCCAATCTTCCGTATGCCTCCACCTTACTCCGTTGTAATTCAGGAATCAGAGAAAGGCCATTGGCATATACCCATTGCATCG GATCAAGATGAGGAATCAGACAGAACATGGTTATGCATTACTCGTGCTAACTCGTCTTCAGAGAAGCAAATCTCAGTTGCTCACAAGCGTGAAGGCATTC TTAGACATGAAACTCCAAACCATTATCCTGTGATGGGTTCCCGGCATCATCAACCTTCTCAGTTCATCAAGTCTCTCCAAGAACTAAAGGAATTGCAGTC TCAGCTACGCCGTGCAGCAGATTACTGGGAGAAAGGCTTCCAGAATGCTAAACAGAAGAAGCAGGTCGTGGAGAGCACAAAAGAGTACGTGTGCAGAGCA GTGGTGGCTGTTGTGGATCATCTGGGCAGCGTTTCAGTCAGTTTGAACACCACAATATCTGACAAGACCCGTGGATTCTCTGGAGCTGAACTCAGGATTG ATTCCCTTAAGCAAAGATTGCTTTCCTATGAACTGTATGCACAGAAGATTGGTCTGACTAGAACGAGATGGTGCCCAAACCTGCCAAAGTTTCACCGCCG ATATATGTCAACACTTATTGACAAAGATGCTAGTCCTGTGGCATCTTCAGCCAATTCTACCAATTACTCCATGGTTCCAGTTGGAGACAGCATCACAGTA TGTGGGAAAGTGCAGACTGCCACGTTCCATTTCCAGCAAATCAGTAATGGTCAGAAGAAGAAGAAGAAGGATGGGCACAGAAGATGGTCTGGCGGCCGTA GTAGTGGCGACGTTGTGTCTCTTGTCCGACGAAGCAAACGGCTATCCTGA
AA sequence Show only first row Show all	>Lus10043223 pacid=23168027 polypeptide=Lus10043223 locus=Lus10043223.g ID=Lus10043223.BGIv1.0 annot-version=v1.0 MASCSTASMFSCSKQHFLSTTFPHSKFPYSQVSSHNHTPSSNAKPKSPLPRSHQVWRRTRNRNDSGSSSPLISEKRIDSQSAKELVSNFEIPDEGTSKRT DGDEMEKPYYKKKSKAVQRRIQLDMCSRRGDVMGAIELYDSANEEGIAMTLYEYSVILYLCSSAAVGVVQPAKSGTCNNAGQVFDESSQASDGVIQVSED VRNYALQKGLEIYESMRLRNVPMNEATLTAVARMAMSTGDGDMAFDMVKQMTQLGITPKLRSYVPALTAYCGSKDVEKAFSVENHMLEHGVSPEASELEA LLRVSVEAGGKGDKVYYLLHNLRTSVRRVSPSTADIIVSWFSSNTASRVGKRKWSELHIKEAIENGGGGWHGKGWLGKGKWRVSYTTVGPDASCRCCGDK LATVDLDPAETENFAESVASIALKSDKDSRFVKFQKWLDHHGPFEVVVDGANVGLSCNKKFIVAKVNAVWDGLRKKFPSHKRPLIILYSRRMSGMTGRKH EALLKKWRNASALFTSPTGSNDDWYWLYAAIKFKSLIVTNDEMRDHSFQLLGNDFFPKWKERHQVRFCFDGTDPIFRMPPPYSVVIQESEKGHWHIPIAS DQDEESDRTWLCITRANSSSEKQISVAHKREGILRHETPNHYPVMGSRHHQPSQFIKSLQELKELQSQLRRAADYWEKGFQNAKQKKQVVESTKEYVCRA VVAVVDHLGSVSVSLNTTISDKTRGFSGAELRIDSLKQRLLSYELYAQKIGLTRTRWCPNLPKFHRRYMSTLIDKDASPVASSANSTNYSMVPVGDSITV CGKVQTATFHFQQISNGQKKKKKDGHRRWSGGRSSGDVVSLVRRSKRLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10043223 [exp]	0	1
AT4G13650			Pentatricopeptide repeat (PPR)...		Lus10040997 [exp]	6.6	0.7830
AT1G34360			translation initiation factor ...		Lus10024699 [exp]	11.0	0.7923
AT5G60710			Zinc finger (C3HC4-type RING f...		Lus10041321 [exp]	11.2	0.7386
AT2G45460	FHA		SMAD/FHA domain-containing pro...		Lus10009303 [exp]	17.5	0.7347
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10002442 [exp]	20.1	0.7871
AT1G44760			Adenine nucleotide alpha hydro...		Lus10029664 [exp]	23.2	0.7723
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	23.5	0.7622
AT2G47230		ATDUF6	DOMAIN OF UNKNOWN FUNCTION 724...		Lus10010060 [exp]	29.2	0.7565
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10039148 [exp]	29.8	0.7860
AT5G40530			S-adenosyl-L-methionine-depend...		Lus10002522 [exp]	30.0	0.7436

Compare expression of checked genes

Lus10043223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.