Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29010 1007 / 0 AIM1 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) AT3G06860 782 / 0 ATMFP2, ATMPF2, MFP2 multifunctional protein 2 (.1) AT3G15290 122 / 9e-31 3-hydroxyacyl-CoA dehydrogenase family protein (.1) AT5G43280 59 / 2e-09 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) AT4G16800 58 / 8e-09 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G60550 49 / 6e-06 ECHID, DHNS enoyl-CoA hydratase/isomerase D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011102 [exp] 1284 / 0 AT4G29010 1043 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Lus10037495 [exp] 775 / 0 AT3G06860 1170 / 0.0 multifunctional protein 2 (.1) Lus10006502 [exp] 437 / 3e-148 AT3G06860 670 / 0.0 multifunctional protein 2 (.1) Lus10006501 [exp] 358 / 9e-118 AT3G06860 504 / 4e-175 multifunctional protein 2 (.1) Lus10020828 [exp] 123 / 6e-31 AT3G15290 465 / 4e-167 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10012681 [exp] 117 / 9e-29 AT3G15290 462 / 5e-166 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Lus10016920 [exp] 78 / 2e-15 AT4G16210 395 / 1e-140 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10037777 [exp] 77 / 1e-14 AT4G16210 360 / 1e-123 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) Lus10010994 [exp] 67 / 2e-11 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G082900 [exp] 1142 / 0 AT4G29010 1094 / 0.0 ABNORMAL INFLORESCENCE MERISTEM, Enoyl-CoA hydratase/isomerase family (.1) Potri.010G011900 [exp] 787 / 0 AT3G06860 1154 / 0.0 multifunctional protein 2 (.1) Potri.008G220400 [exp] 765 / 0 AT3G06860 1161 / 0.0 multifunctional protein 2 (.1) Potri.001G398600 [exp] 121 / 2e-30 AT3G15290 446 / 9e-160 3-hydroxyacyl-CoA dehydrogenase family protein (.1) Potri.001G153300 [exp] 62 / 4e-10 AT4G16800 346 / 8e-120 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G061000 [exp] 58 / 5e-09 AT5G43280 379 / 1e-133 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2) Potri.003G080800 [exp] 53 / 3e-07 AT4G16800 266 / 7e-89 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.001G329900 [exp] 47 / 4e-05 AT1G60550 550 / 0.0 enoyl-CoA hydratase/isomerase D (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase CL0106 [flax] [poplar] 6PGD_C PF00725 [flax] [poplar] 3HCDH 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF02737 [flax] [poplar] 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10043224 pacid=23167900 polypeptide=Lus10043224 locus=Lus10043224.g ID=Lus10043224.BGIv1.0 annot-version=v1.0 ATGGCTAAGCCTCACGTGTCGATGGAGGTCGGGAACGACGGCGTCGCAGTCATTGCCATCTTCAATCCTCCGGTTAATGCTTTAGCTATCCCAATACTCG ACGGATTGAAGGAGAAGTTCGCCGAGGCCACCAGCAGAAACGACGTCAAGGCAATCGTTCTCACTGGCAAGGGTGGAAGATTTTCCGGCGGTTTTGACAT CAATGTATTCCAAAAGGTCCATGCAACCGGGGATGTCTCTATCATGCCTGATGTTTCTGTTGATCTTGTGGTCAACACTATTGAAGATTGCAAGAAGCCA GTTGTTGCAGCTGTGGAAGGATTGGCATTGGGTGGAGGCTTAGAACTAGCACTGGGATGTCATGCACGTATTGTTGCACCAAGAACGCAACTTGGCCTAC CAGAATTAACACTTGGTGTAATTCCTGGTTTCGGAGGTACACAGCGACTCCCAAGGCTTGTAGGAGTCTCGAAAGCCATTGATATGATGCTGCTATCCAA ACCGATCCTCTCTGAAGAAGGAAAGAAACTTGGTCTTGTTGATGCTCTTGTCTCTTCTCAAGAGTTGCTGAAAGTATCTCGTGAATGGGCTTCGGACATT GCTGACAGGCGCAAACCATGGGTCCGTTCGCTTCATAAGACTGATAAGATTGGTTCCCTAGCTGAGGCCCGCCAGGTCCTGCAAGCTGCTCGGCTACAAG CCAAGAAGATAGCTCCAAATATGCCTCAACATCTGGGATGCCTCGATTCAATTGAGGATGGCATTATTCATGGAGGGTATAGTGGGGTTCTAAAGGAAGC AAGAGTATTCAAGGAGTTAGTCTTATCAGATACTTCTAGGGGTCTGGTTCATTCATTTTTTGGCCAGCGTGCAACATCAAAGGTGCCTGGTGTTACTGAT GTTGGGCTTAAGCCAAGGAAGATAAAGAAAGTGGCTGTAATAGGTGGAGGGTTAATGGGTTCTGGTATAGCTACTGCCCTAATTACAAGCAACATATATG TTCTTCTCAAAGAAATCAACTCTGAGTATCTTCTCAAAGGGATAAAAACCATAGAAGGTAGGTCGCCTATTTACTCTGGTTTTAAAGCTGATCGGACTGG AAATGTTCGGAACTTGGAGACAAGAGGAAAGTTGACGAAGGATAAGGCTAGCAAAGCTCTTTCAATGTTGAAAGGTGTTTTGGACTATTCTGGCTTCAAG GATGTGGACATGGTCATAGAGGCAGTTATTGAGAGTATTCCTTTGAAACAAAAAATATTTGCTGAGCTTGAAAATATTTGTCCTGGCCACTGCATTTTAG CATCAAATACATCCACCATCGACTTGAATGTGATTGGAGAGAAGACCAATTCACAGGATCACATAATAGGAGCACATTTTTTCAGCCCTGCTCATATAAT GCCCCTTCTGGAGATTGTGAGGACGAACAGAACCTCTGCCCAAGCAATTCTTGATCTAATGATAGTTGGGAAGACCATAAAGAAAGTACCAGTCGTTGTG GGTAATTGCACTGGTTTTGCAGTCAATCGGACCTTTTTCCCCTATTCGCAGAGTGCACACTTGCTAGTCCATCTAGGTGTGGACATCTTCAGAATCGACA AGGTTATCAGCAGCTTCGGACTCCCTATGGGTCCTTTCCAGCTTCAGGATCTTGCTGGATATGGAGTAGCTGTGGCAGTGGGCAAAGAATTCAGCAGTTC ATTCCCTGACCGCGTATTCAAGACGCCACTGGTTGATCTGTTGATTAAAAATGGACGGAATGGTAAGAACAATGGAAGAGGATACTACATATACGAGAAG GGAAGCAAGCCAAAGCCGGATTCCACGGTAGTACCGATCATCGAGGAGTCCAGACGTATTGCTAATATCATGCCCAACGGAAAGCCGATTAATGTTACTG ATGTGGAGATTATGGAGATGATCCTCTTCCCAGTGGTAAACGAGGCATGTCGTGTACTCGAAGAGGGCGTGGTTATTAGAGCTTCAGACCTCGATACAGC ATCTGTACTCGGAATGAGCTTCCCATCTTATCGGGGTGGGATCGTGTTCTGGGCGGACTTGATTGGGGCAAAACACATATACTCAAGCTTGAAGGGGTGG TCGGAGTTGTACGGTGGGTTCTTCAAGCCATCGAGGTACTTGGAAGAACGAGCTACGAAGGGAGTGCCACTGGTAAGTAACCAAATCAAATCTGTTTGA
AA sequence Show only first row Show all	>Lus10043224 pacid=23167900 polypeptide=Lus10043224 locus=Lus10043224.g ID=Lus10043224.BGIv1.0 annot-version=v1.0 MAKPHVSMEVGNDGVAVIAIFNPPVNALAIPILDGLKEKFAEATSRNDVKAIVLTGKGGRFSGGFDINVFQKVHATGDVSIMPDVSVDLVVNTIEDCKKP VVAAVEGLALGGGLELALGCHARIVAPRTQLGLPELTLGVIPGFGGTQRLPRLVGVSKAIDMMLLSKPILSEEGKKLGLVDALVSSQELLKVSREWASDI ADRRKPWVRSLHKTDKIGSLAEARQVLQAARLQAKKIAPNMPQHLGCLDSIEDGIIHGGYSGVLKEARVFKELVLSDTSRGLVHSFFGQRATSKVPGVTD VGLKPRKIKKVAVIGGGLMGSGIATALITSNIYVLLKEINSEYLLKGIKTIEGRSPIYSGFKADRTGNVRNLETRGKLTKDKASKALSMLKGVLDYSGFK DVDMVIEAVIESIPLKQKIFAELENICPGHCILASNTSTIDLNVIGEKTNSQDHIIGAHFFSPAHIMPLLEIVRTNRTSAQAILDLMIVGKTIKKVPVVV GNCTGFAVNRTFFPYSQSAHLLVHLGVDIFRIDKVISSFGLPMGPFQLQDLAGYGVAVAVGKEFSSSFPDRVFKTPLVDLLIKNGRNGKNNGRGYYIYEK GSKPKPDSTVVPIIEESRRIANIMPNGKPINVTDVEIMEMILFPVVNEACRVLEEGVVIRASDLDTASVLGMSFPSYRGGIVFWADLIGAKHIYSSLKGW SELYGGFFKPSRYLEERATKGVPLVSNQIKSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10043224 [exp]	0	1
AT4G29010		AIM1	ABNORMAL INFLORESCENCE MERISTE...		Lus10011102 [exp]	1.0	0.8710
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10023672 [exp]	8.9	0.8688
AT1G68300			Adenine nucleotide alpha hydro...		Lus10034337 [exp]	26.2	0.8636
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Lus10012327 [exp]	37.2	0.8279
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10028075 [exp]	46.2	0.8052
AT1G22930			T-complex protein 11 (.1.2)		Lus10015468 [exp]	46.9	0.8242
AT3G23610		DSPTP1	dual specificity protein phosp...		Lus10006229 [exp]	49.8	0.8191
AT5G11520		YLS4, ASP3	YELLOW-LEAF-SPECIFIC GENE 4, a...		Lus10022137 [exp]	58.9	0.8046
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	67.0	0.8138
AT2G36970			UDP-Glycosyltransferase superf...		Lus10021437 [exp]	67.6	0.8075

Compare expression of checked genes

Lus10043224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.