Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29000 470 / 6e-160 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 423 / 5e-142 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT5G25790 279 / 2e-87 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G16160 142 / 3e-37 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 132 / 2e-32 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 129 / 2e-31 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22780 128 / 5e-31 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 124 / 1e-29 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011103 [exp] 727 / 0 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 530 / 0 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 302 / 1e-94 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 294 / 5e-91 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 133 / 2e-32 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 132 / 6e-32 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 110 / 5e-25 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 109 / 1e-24 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160400 [exp] 525 / 0 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G083000 [exp] 406 / 2e-137 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 301 / 1e-93 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.001G184800 [exp] 274 / 3e-85 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.010G083400 [exp] 139 / 2e-34 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 135 / 4e-33 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 131 / 7e-32 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.005G051100 [exp] 129 / 4e-31 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 125 / 6e-30 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 103 / 9e-23 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [flax] [poplar] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Lus10043225 pacid=23168406 polypeptide=Lus10043225 locus=Lus10043225.g ID=Lus10043225.BGIv1.0 annot-version=v1.0 ATGGAGGAGGGCGAAGGGGGCGAATTCCCTCCAAATAACGCTCCCCAATCGGAGGCTCAACAACCTTTAGATGCCCCTGCGAAGAAGCTTGCTAGGCAGC TGGATTTCACGCACACCACTTCCGTGGCTCTCCCAGACCATTCGCAATCTTCGCAGCAGCAGCAGCCAGCCGGCGGCGGGGGGGGGGGGCAGTGGGGGGG GGTGGATGTACAGCCGATTGCCAAACCGTTGGTCCCTGTAGCTGTTACTCAGAGCCTTCCGTATCTCGCTCCAACAGCGGCTCAGCCTCCGAATCTGCAG CATGAGCAAGTTCTTCCAGTTGTGAAGCCTGAAAATCCCGATTCTCCTAAATCAAGGTCAAGAACAGCTACAGAATTGAAAGATGCTACTCCAAAGAAGC CGAAACAGTGCAACTGCAAACACTCACAGTGCTTGAAGCTGTACTGCGAGTGCTTTGCGTCTGGAACGTATTGTGATGGATGCAATTGCACAGGTTGCTT CAACAATGCAGACAATGAATCTTCCAGGCGAGAAGCAATCAAAGTAACATTGGAGCGTAATCCTAATGCTTTCAGGCCAAAAATTACAAGCAGCCCACAT GGGACACAAGATAAGCGGGAGGAAAAAGGGGAAGTAATAGTCTTGGGAAGGCATAACAAGGGATGCCACTGTAAAAAGTCAGGATGCCTAAAGAAGTACT GTGAATGTTTCCAAGCAAACATTCTCTGCTCTGAAAATTGTAGGTGCAACGACTGCAAGAATTTTGAAGGAAGTGAGGAACGACAGGCGCTCTTTCACAA TGACCATGCCAACAACATTGCATACATTCAGCAAGCCGCAAATGCTGCTATAACAGGAGCTATAGGTACATCTGGGTTTACATCCCCTCCTGTGTCTCGC AAGAGGAAAGGTTCGGAATCAATTTTCGATCAAAAAGGCAGGGACCGGGCCCTTCACAGGCCGGGACATATTCAGCAGGCTAACCAAATCATAGCTCCAG CACCGTGTTCAAACCCTGTTGTTCGTGGTACTATGGCAACATTGACCCCTTCAAAATTCACATACAGGTCTCTGTTAGCAGACATTATCCAACCACATGA CATAAAAGAACTTTGTTCTGTGCTGGTTGTTATATCAAGAGAAGCTGCTAAAACGCTGGAAGAACAAAGAAGTGAAGAAGAGAAGCAGTTAGGGGACCAA AGAAAAGCTAATATCACATCATCAAGTGATCAAGAAAGGTTGCAGAACAAGAGAGAATCAGATGCCAAGAAAAGCAAAGGTCAAGATGATTGTTCTGCAA TCGATAATGCAGGTCCCGATAGTTCCACATCGGAAGGTGTAGATGCGCCTAAGTCGGAACCAATGTCACCAGGGACTTTGGCCCTTATGTGTGATGAAAA AGATACAATGTTTATGGAAGCAGCTGCTTCTTCCTCCAGTGGTTTGACAGACCAGGGTGGCAATGGCAATGCAGTGCTGCAATTGCCTAAGAAAGTTGGC GGCTTGACAGAGATGTATGCAGAGCAAGAAAGGGTGGTACTAGCCAAGTTCAGAGATTGCTTAAATAAGCTTATCGCCATAGGAGAGAATATAAAAGGCA CGTTCCTTTCTTTCCTCTTTTCTTCTGAAAGATATTTTTTCTTTTGCACTTTGCTTTCAGTGTTGATAGCTGATATCCTTGCCAATTCCAACAGAAACAA AACGTTCGTCTTTAGCGCGAATGGAGTCTTCGATGGATCAAAAGTACATATTAAGCAATAG
AA sequence Show only first row Show all	>Lus10043225 pacid=23168406 polypeptide=Lus10043225 locus=Lus10043225.g ID=Lus10043225.BGIv1.0 annot-version=v1.0 MEEGEGGEFPPNNAPQSEAQQPLDAPAKKLARQLDFTHTTSVALPDHSQSSQQQQPAGGGGGGQWGGVDVQPIAKPLVPVAVTQSLPYLAPTAAQPPNLQ HEQVLPVVKPENPDSPKSRSRTATELKDATPKKPKQCNCKHSQCLKLYCECFASGTYCDGCNCTGCFNNADNESSRREAIKVTLERNPNAFRPKITSSPH GTQDKREEKGEVIVLGRHNKGCHCKKSGCLKKYCECFQANILCSENCRCNDCKNFEGSEERQALFHNDHANNIAYIQQAANAAITGAIGTSGFTSPPVSR KRKGSESIFDQKGRDRALHRPGHIQQANQIIAPAPCSNPVVRGTMATLTPSKFTYRSLLADIIQPHDIKELCSVLVVISREAAKTLEEQRSEEEKQLGDQ RKANITSSSDQERLQNKRESDAKKSKGQDDCSAIDNAGPDSSTSEGVDAPKSEPMSPGTLALMCDEKDTMFMEAAASSSSGLTDQGGNGNAVLQLPKKVG GLTEMYAEQERVVLAKFRDCLNKLIAIGENIKGTFLSFLFSSERYFFFCTLLSVLIADILANSNRNKTFVFSANGVFDGSKVHIKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29000	CPP		Tesmin/TSO1-like CXC domain-co...		Lus10043225 [exp]	0	1
AT1G14650			SWAP (Suppressor-of-White-APri...		Lus10035958 [exp]	4.0	0.8403
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	7.1	0.8398
AT5G44180	HD		Homeodomain-like transcription...		Lus10039870 [exp]	13.4	0.8273
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10042785 [exp]	14.1	0.7907
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	16.3	0.7775
AT4G20310			Peptidase M50 family protein (...		Lus10001219 [exp]	23.5	0.7708
AT4G02680		EOL1	ETO1-like 1 (.1)		Lus10022084 [exp]	24.8	0.7915
AT5G15540		EMB2773, ATSCC2	EMBRYO DEFECTIVE 2773, ARABIDO...		Lus10032966 [exp]	25.7	0.7727
AT3G55320		ABCB20, PGP20	ATP-binding cassette B20, P-gl...		Lus10023437 [exp]	26.0	0.7982
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026251 [exp]	27.7	0.7871

Compare expression of checked genes

Lus10043225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.