Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 84 / 1e-18 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12020 69 / 2e-13 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3) AT4G19500 67 / 4e-13 nucleoside-triphosphatases;transmembrane receptors;nucleotide binding;ATP binding (.1.2) AT3G25510 67 / 8e-13 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 66 / 9e-13 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41750 66 / 1e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46270 66 / 2e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G22690 65 / 3e-12 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G40060 64 / 6e-12 Disease resistance protein (NBS-LRR class) family (.1) AT1G31540 63 / 1e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011104 [exp] 221 / 9e-67 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 116 / 5e-30 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 92 / 2e-21 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 85 / 5e-19 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041078 [exp] 74 / 3e-15 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 72 / 1e-14 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 69 / 9e-14 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10008222 [exp] 68 / 2e-13 AT4G12010 327 / 4e-96 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10008221 [exp] 67 / 5e-13 AT4G12010 400 / 8e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G002500 [exp] 114 / 3e-29 AT5G17680 587 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G103701 [exp] 105 / 2e-26 AT5G17680 544 / 5e-170 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 105 / 2e-26 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.013G097300 [exp] 104 / 7e-26 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104901 [exp] 103 / 2e-25 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 102 / 5e-25 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 99 / 3e-24 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.001G307300 [exp] 99 / 4e-24 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098000 [exp] 93 / 5e-22 AT5G17680 575 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G097000 [exp] 93 / 5e-22 AT5G17680 571 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043227 pacid=23168204 polypeptide=Lus10043227 locus=Lus10043227.g ID=Lus10043227.BGIv1.0 annot-version=v1.0 ATGGGTAGAGATATTGTTTTTCACGAATCTCCCAGGAATCCTGGAAGGCGCAGTCCATTGTGGGATCCCGAAGATGTCCTTTCTGTGTTGATTACACCAA TGGGAAGGGAAGAGGTGGAAGCCATTGTATTGGATCTATCAGAGATGGAGGAGATGCAATTAAATAGGGAAGCTTTCTCAAATATGAGTCTGAGACTGCT TATCATACGCAAGGCCAAATTTGATGCAGGACCCGTCAATCTTCCCAGTGAATTGAGATTTCTTGAATGGGATGGGTACCCTGCAGACTCGTTTCCGGCT CCTTTTAGACATAGTAAACTCGTGGAACTTATCATGCACCGCCCTCTATTTTCTATCTCAAGAAACTCAAGAGTAATATCATTTCAGGGCTGCAAGGGAC CATTATTATACGAGTCAACCCAGCGCACATTTACATCTTCAAGTCAACATCACTTGTTAATGAACTGTTACAACATGAAGTTGCCTGCCTTGTTTGGTTA CCATTCAATAACAACTCTGGACCTGGGGGACTGTGGGCTGAGGGAAGGAGATCTTGTTTCCGTCCTTGGAGTTGTTGAATCTAAGCAATAG
AA sequence Show only first row Show all	>Lus10043227 pacid=23168204 polypeptide=Lus10043227 locus=Lus10043227.g ID=Lus10043227.BGIv1.0 annot-version=v1.0 MGRDIVFHESPRNPGRRSPLWDPEDVLSVLITPMGREEVEAIVLDLSEMEEMQLNREAFSNMSLRLLIIRKAKFDAGPVNLPSELRFLEWDGYPADSFPA PFRHSKLVELIMHRPLFSISRNSRVISFQGCKGPLLYESTQRTFTSSSQHHLLMNCYNMKLPALFGYHSITTLDLGDCGLREGDLVSVLGVVESKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17680			disease resistance protein (TI...		Lus10043227 [exp]	0	1
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036671 [exp]	1.4	0.8978
AT4G34150			Calcium-dependent lipid-bindin...		Lus10002825 [exp]	2.0	0.8738
AT2G42920			Pentatricopeptide repeat (PPR-...		Lus10012235 [exp]	3.5	0.8633
AT3G51120			DNA binding;zinc ion binding;n...		Lus10014272 [exp]	5.5	0.8625
AT4G25030			unknown protein		Lus10034730 [exp]	8.8	0.8387
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10010737 [exp]	9.9	0.8381
AT2G45720			ARM repeat superfamily protein...		Lus10016848 [exp]	12.2	0.8461
AT1G19835			Plant protein of unknown funct...		Lus10032386 [exp]	13.0	0.8203
AT4G34320			Protein of unknown function (D...		Lus10040489 [exp]	13.2	0.8633
AT4G04720		CPK21	calcium-dependent protein kina...		Lus10006777 [exp]	14.7	0.8506

Compare expression of checked genes

Lus10043227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.