Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28830 331 / 5e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011107 [exp] 378 / 2e-135 AT4G28830 349 / 5e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083800 [exp] 333 / 7e-118 AT4G28830 331 / 8e-117 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF05175 [flax] [poplar] MTS Methyltransferase small domain
Representative CDS sequence Show only first row Show all	>Lus10043228 pacid=23168133 polypeptide=Lus10043228 locus=Lus10043228.g ID=Lus10043228.BGIv1.0 annot-version=v1.0 ATGAAGCTGAAGCAATTGGAAAGCCTGCTTGGCGATCTTCAACAATTCTCCAACCCAAAGGTTGAGCTGGAGCAGTATCCCACTGGACCTCATATCGCTT CCCGCATGCTCTTCACTGCCGAGAATTCATTTGGGGATGTGACGGATAAGGTGGTTGCAGATTTTGGCTGTGGTTGTGGGACATTAGGTGCTGCTGCTGC TCTTATGGGTGCAGAACAGGTGATCGGTATCGACATTGATTCAGAATCTCTCGAGATGGCAACAGCGAATGCTGAGGATCTCGAGCTGGACATAAACTTT GTACAGTGTGACATCAGCAGGCTAGCGTTGAGAGGTTGTGTTGTTGATACAGTTGTAATGAACCCTCCATTTGGAACACGGAAGAAAGGCGCAGATATGG TTTTCCTCTCTGCGGCCTTAAAAGTTGCTTCTCAAGCGGTTTATTCTTTGCACAAAACATCAACCAGAGAGCATATTAAAAGAGCAGCCCTGCAGAACTT AGGTGCTAAAAGTGCTGAAGTTTTGTGTGAGCTCCGGTATGACCTTCCAAAACTATACAAGTTCCATAAGAAGAAGGAGATGGATATAGCAGTAGACCTT TGGCGGTTCGAGCCAAAGCATTGA
AA sequence Show only first row Show all	>Lus10043228 pacid=23168133 polypeptide=Lus10043228 locus=Lus10043228.g ID=Lus10043228.BGIv1.0 annot-version=v1.0 MKLKQLESLLGDLQQFSNPKVELEQYPTGPHIASRMLFTAENSFGDVTDKVVADFGCGCGTLGAAAALMGAEQVIGIDIDSESLEMATANAEDLELDINF VQCDISRLALRGCVVDTVVMNPPFGTRKKGADMVFLSAALKVASQAVYSLHKTSTREHIKRAALQNLGAKSAEVLCELRYDLPKLYKFHKKKEMDIAVDL WRFEPKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	0	1
AT1G24120		ARL1	ARG1-like 1 (.1)		Lus10030827 [exp]	1.0	0.9340
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	3.0	0.9244
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10021502 [exp]	3.5	0.9262
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	4.0	0.9092
AT5G03345			unknown protein		Lus10026529 [exp]	4.5	0.9012
AT1G20770			unknown protein		Lus10013217 [exp]	4.5	0.9156
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	5.1	0.9051
AT5G59460			scarecrow-like transcription f...		Lus10001576 [exp]	7.1	0.8880
AT5G12320			ankyrin repeat family protein ...		Lus10009696 [exp]	7.1	0.9029
AT1G43860			sequence-specific DNA binding ...		Lus10042780 [exp]	7.3	0.9114

Compare expression of checked genes

Lus10043228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.