Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29060 336 / 3e-102 EMB2726 embryo defective 2726, elongation factor Ts family protein (.1.2) AT4G11120 86 / 3e-17 translation elongation factor Ts (EF-Ts), putative (.1) AT5G30510 57 / 5e-08 ARRPS1, RPS1 ribosomal protein S1 (.1) AT3G23700 56 / 7e-08 Nucleic acid-binding proteins superfamily (.1) AT5G14580 54 / 7e-07 polyribonucleotide nucleotidyltransferase, putative (.1) AT3G11964 54 / 9e-07 RNA binding;RNA binding (.1) AT3G03710 48 / 3e-05 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011108 [exp] 1752 / 0 AT4G29060 1031 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Lus10012296 [exp] 86 / 4e-17 AT4G11120 531 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Lus10016073 [exp] 85 / 5e-17 AT4G11120 549 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Lus10017100 [exp] 58 / 2e-08 AT5G30510 590 / 0.0 ribosomal protein S1 (.1) Lus10037822 [exp] 58 / 2e-08 AT5G30510 583 / 0.0 ribosomal protein S1 (.1) Lus10022250 [exp] 58 / 5e-08 AT5G14580 1244 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10008763 [exp] 58 / 5e-08 AT5G14580 1215 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 49 / 2e-05 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10013636 [exp] 49 / 2e-05 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G083900 [exp] 725 / 0 AT4G29060 691 / 0.0 embryo defective 2726, elongation factor Ts family protein (.1.2) Potri.014G172300 [exp] 85 / 4e-17 AT4G11120 514 / 0.0 translation elongation factor Ts (EF-Ts), putative (.1) Potri.008G101100 [exp] 61 / 2e-09 AT5G30510 615 / 0.0 ribosomal protein S1 (.1) Potri.010G150300 [exp] 61 / 2e-09 AT5G30510 575 / 0.0 ribosomal protein S1 (.1) Potri.014G148500 [exp] 57 / 6e-08 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1) Potri.001G347900 [exp] 54 / 4e-07 AT5G14580 1224 / 0.0 polyribonucleotide nucleotidyltransferase, putative (.1) Potri.015G024400 [exp] 49 / 2e-05 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.013G065700 [exp] 48 / 3e-05 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.019G040100 [exp] 48 / 4e-05 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.012G034200 [exp] 44 / 0.001 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00889 [flax] [poplar] EF_TS Elongation factor TS CL0021 [flax] [poplar] OB PF00575 [flax] [poplar] S1 S1 RNA binding domain CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10043229 pacid=23168062 polypeptide=Lus10043229 locus=Lus10043229.g ID=Lus10043229.BGIv1.0 annot-version=v1.0 ATGATGCCAGGAATCCTATGTTCGACAAGCAGAATTGCACTCATTCCAGGAACTCCTTTCACATTAACAAAGAACAACGGTTCTACTAAATGTAGTTTAT CCAGGAAACCAACCAAGCATGCAACATTCTTACCCTTCCCTGCATCGGTTAAGTCCTTGCCCAATTACAGAAGGTGTCATCATGCTTTCGTCAGGACGAG GACGATGCACGAGCTATCAGCCACAGGCACTGACGTAGCGGTTGGTGAGGCGGAAACACCTGCTGTCACTGAGGAAACTTCTGATGGAGCCGATGAAAAT GGAACTTCCTCTTCTCCCCCATCGGATGCCAGTACTCCAACAGCTCAACCTAAGCGTGCAAGACCAGGAAGAAGAAGCGAGATGCCACCGGTAAAGAATG AGGATTTGGTTCCTGGTGCAACATTCACCGGAAAAGTCAGGTCTATTCAACCATTTGGCGCGTTCATCGATTTTGGAGCTTTCACGGATGGCCTTGTACA TGTTTCAAAGCTGAGTGATGGCTTTGTTAAGGATGTTGGAGATGTTGTTTCTGTTGGACAAGAGGTTCAGGTAAGGCTAGTTGAAGCAAGCACTGAGACA GGGCGTATTTCTCTTAGTATGCGAGACGATGATTCAAGTAGTAAGCCGCAGCAAAGAAGAGATACATCTTCTGCAGCCAGTGGAGGAGATAAGCCAAGAC CTGCAAGAAGAAATACACAGAGGACAGGCCAGAAGAGGGATGAAAAGAGTTCAAAGTTTACTATTGGGCAGCAACTAGAAGGAACAGTTAAGAACTTGGC CAGGTCTGGTGCTTTCATTTCTCTCCCTGACGGTGAGGAAGGATTCTTGCCTTCATCAGAAGAAGCTACTGAGGGATTCGTAAACATGATGGGTGGCTCT AAACTGGAGGTAGGACAACAAGTCAGTGTGAGGGTTTTGCGTGTGAATAGAGGCCAGGCTACATTGACAATGAAAAAGGAGGTAGACAATAAAAATGTAG GTGGGTTACTAGGCCAGGGAGTGGTCCATGCGGCAACAAATCCTTTCCTGCTGGCTTTCCGTAAGAACGAGGATATAGCAAGCTTTCTAGACGAAAGAGA GAAGGCAGAGAAAGAGGCAGAGACTACTTTAGTGGAGGAAGAGCTAAAACAGGAAGGTAATGTGTCTGATGTTCAATTAGAAACCGGTTCCGACAGCTTA GTTGGTGTCTCTTCCTTGGTAGACCAAACGGTAGAAGATGCTGTTGCTTCTTCGGAGGTGATTCTAGACTCTAGTTTATCAGAAGTGGAGAGTACTGTTC AAATTATAGCTGATAAGACGATTGAAGAAGAGAATGTAGCTGTGGATATCGCAATTCCAGATCAAAAGGTTGAGGAAGAACCTTTGGCAGAAGCAGAGGA AAGCGAGGTTAAGTCCGGTTTATCTGAAGAAATAGCTGGTCAAGCCTTATCGTCAGAAACTCCCGTCAATGAAACTATTGCCACACCAGTAGTAGATAAT GAAATCGTGGCACCAGATTCTGAAGGAAATGGGAGTACTGCCATTGCAGATGAAGTGGAAAATCTTACAGCGGCAGAAGTCCCAGAGGAAGTCGAAGCCA ACAAGGATGCAGTGGAGATTCAAACCTCTGCCATGGACAATGAGACTACTTCTGCCTCTCTGGTTCCAGATGAGATACCTGAGAAAAATGCAACAACTAT CTCACCAGCTCTGGTAAAGCAACTTCGAGAGGAAACAGGAGCAGGAATGATGGATTGCAAGAACGCTCTTTCCGAGACAGGAGGCGACATCATTAAAGCA CAGGAATTCCTCCGAACCAAAGGGCTGGCAAGTGCAGAGAAAAAGGCGAGCAGAGCCACTGCAGAAGGAAGAATCGGCTCTTACATTCATGACAGCAGAA TCGGTATCCTCATTGAGGTCAACTGCGAAACAGACTTTGTTTCCCGTGGCGAAATTTTCAAGGAACTGGTTGATGACCTATCGATGCAAGTGGCTGCGTG CCCACAAGTGAAGTATGTAGCCAAGGAAGATGTTGCTGAAGAACTCGTTAGCAAGGAAAGAGAGATCGAGATGCAAAAGGAAGATCTCCTGTCCAAACCG GAGCAGATCAGAGCTAAAATCGTGGAAGGGCGGATCCAGAAGAGGCTCGACGAACTGGCACTGCTGGAGCAACCATACATCAAGAATGATAAGGTTGTGG TTAAGGACTGGATTAAGCAGACAATAGCCACCATTGGCGAAAATATGAAAGTTAAGAGGTTTGTCCGCTTCAATCTCGGTGAGGGTCTCGAGAAGAAAAG CCAGGATTTTGCTGCTGAGGTTGCTGCACAAACTGCAGCTAGATCAGCCCCAGCGCCACCGAAAGAAGAACCTGCTGCAACCGAGGACAAAGAAGATGTT CAGAAGGCACCAGCGGCACCGGTTTCTGCAGCACTGGTGAAGCAACTGAGGGAAGAAACAGGAGCAGGGATGATGGACTGCAAGAAAGCACTCTCTGAAA CTGGAGGTGATCTGGAGAAGGCACAGGAGTATCTCAGAAAGAAAGGTCTTTCATCCGCGGATAAGAAATCCAGCCGAATTGCTGCTGAGGGCCGAATTGG TTCCTACATCCACGATTCTCGCATCGGAGTACTGATTGAGGTCAACTGCGAGACTGATTTCGTCGGCAGAAGCGAGAAATTCAAGGAATTAGTTGATGAT CTGGCAATGCAGGTTGTGGCCTGCCCACAGGTGCGGTTTGTATCTGTCGAAGATGTGCCGGAGAGCGTAATAATGAAAGAAAAGGAACTCGAAATGCAGA GGGAGGACCTCCAGTCGAAACCGGAGAACATTAGGGAAAAGATTGTGGAAGGAAGGATGTCGAAAATGCTGGGAGAGCTTGCACTTCTGGAGCAGCCGTT CATTAAAGACGACAAACTCCTGGTGAAGGATTTGGTGAAGCAAACCATTGCTGCTCTGGGTGAGAACATAAAGGTCCGCAGGTTTGTCAAGTTTACTCTT GGAGAAGCCATTGAAGATGCAAACCCGGAAGCTTAG
AA sequence Show only first row Show all	>Lus10043229 pacid=23168062 polypeptide=Lus10043229 locus=Lus10043229.g ID=Lus10043229.BGIv1.0 annot-version=v1.0 MMPGILCSTSRIALIPGTPFTLTKNNGSTKCSLSRKPTKHATFLPFPASVKSLPNYRRCHHAFVRTRTMHELSATGTDVAVGEAETPAVTEETSDGADEN GTSSSPPSDASTPTAQPKRARPGRRSEMPPVKNEDLVPGATFTGKVRSIQPFGAFIDFGAFTDGLVHVSKLSDGFVKDVGDVVSVGQEVQVRLVEASTET GRISLSMRDDDSSSKPQQRRDTSSAASGGDKPRPARRNTQRTGQKRDEKSSKFTIGQQLEGTVKNLARSGAFISLPDGEEGFLPSSEEATEGFVNMMGGS KLEVGQQVSVRVLRVNRGQATLTMKKEVDNKNVGGLLGQGVVHAATNPFLLAFRKNEDIASFLDEREKAEKEAETTLVEEELKQEGNVSDVQLETGSDSL VGVSSLVDQTVEDAVASSEVILDSSLSEVESTVQIIADKTIEEENVAVDIAIPDQKVEEEPLAEAEESEVKSGLSEEIAGQALSSETPVNETIATPVVDN EIVAPDSEGNGSTAIADEVENLTAAEVPEEVEANKDAVEIQTSAMDNETTSASLVPDEIPEKNATTISPALVKQLREETGAGMMDCKNALSETGGDIIKA QEFLRTKGLASAEKKASRATAEGRIGSYIHDSRIGILIEVNCETDFVSRGEIFKELVDDLSMQVAACPQVKYVAKEDVAEELVSKEREIEMQKEDLLSKP EQIRAKIVEGRIQKRLDELALLEQPYIKNDKVVVKDWIKQTIATIGENMKVKRFVRFNLGEGLEKKSQDFAAEVAAQTAARSAPAPPKEEPAATEDKEDV QKAPAAPVSAALVKQLREETGAGMMDCKKALSETGGDLEKAQEYLRKKGLSSADKKSSRIAAEGRIGSYIHDSRIGVLIEVNCETDFVGRSEKFKELVDD LAMQVVACPQVRFVSVEDVPESVIMKEKELEMQREDLQSKPENIREKIVEGRMSKMLGELALLEQPFIKDDKLLVKDLVKQTIAALGENIKVRRFVKFTL GEAIEDANPEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	0	1
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	1.0	0.9962
AT3G48730		GSA2	glutamate-1-semialdehyde 2,1-a...		Lus10034205 [exp]	2.0	0.9692
AT3G19810			Protein of unknown function (D...		Lus10010214 [exp]	2.8	0.9608
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10039071 [exp]	3.5	0.9628
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	3.7	0.9489
AT1G02150			Tetratricopeptide repeat (TPR)...		Lus10024781 [exp]	5.0	0.9533
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10032151 [exp]	5.2	0.9457
AT4G16390		SVR7	suppressor of variegation 7, p...		Lus10038788 [exp]	5.5	0.9525
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Lus10043413 [exp]	5.7	0.9439
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	6.3	0.9462

Compare expression of checked genes

Lus10043229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.