Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19580 617 / 0 glyoxal oxidase-related protein (.1) AT1G67290 605 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT1G75620 422 / 1e-140 glyoxal oxidase-related protein (.1) AT1G19900 400 / 4e-132 glyoxal oxidase-related protein (.1) AT3G57620 395 / 2e-130 glyoxal oxidase-related protein (.1) AT1G14430 387 / 8e-127 glyoxal oxidase-related protein (.1) AT3G53950 359 / 3e-116 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011109 [exp] 1048 / 0 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 944 / 0 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10043231 [exp] 771 / 0 AT5G19580 647 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 743 / 0 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10011111 [exp] 741 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 737 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 620 / 0 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 421 / 3e-140 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 406 / 3e-134 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 724 / 0 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 711 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 436 / 4e-146 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 429 / 2e-143 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 421 / 2e-140 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 415 / 4e-138 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 392 / 1e-128 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 389 / 5e-128 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 386 / 1e-126 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 376 / 3e-123 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10043230 pacid=23168353 polypeptide=Lus10043230 locus=Lus10043230.g ID=Lus10043230.BGIv1.0 annot-version=v1.0 ATGAAGAATAAGGCGAGCTACTACTTGATCAGCCTGATTCTGCTGCCGGCGTTGTTCATGACGGCGGTGGTCGGAACCAACACCGAGGGCCTATTCAAAC GCCCACGTGACTTCAGCCTTCTGAACAAGGAGCACGTGATGGGGAAACACAAGCTGCTCGGGGACCCGTTCGGGAAACCGAACGACTTCAAGTCAAGGAA GATCCCGGACGACGTTGGCACCCCGATGGACCCGGCCCTAAAGCATGTGGAGCAGGTCGCCAAAGAGGCCCAAAAGGAGGAAAAGCCCCAAACTCTGGAG CTCCCAAACGCTGACGACGTCGGCGGCGGAGGGAAGAGCAAGTTGGGTGCGAAGCTGAAGGACAGGTTTGTCGGAGGCGGGGAGAGTCCGTTGGTTTCCC CTGGCGCGTACAACGGGGAGTGGGAGCTGTTCTCCAAGAACTCGGGAGTGTCGGCGATGCACTCGATATTGCTGCCCAAGGTTGATAAGGTGTTGATGTA TGATTCTACGATATGGAGGATTTCCAACATTATGTTGCCGAATGGGGTGTGTCGTGCGTTGGCTGAGGAGACTGGGGAGAAGGATTGTTATGCTCATTCG GTTTGGTTCGATACCCACCTCGATAACCTCATTCCACTCGAGTTGAAGACGGATACATGGTGTTCGTCGGGAGGGCTGACGTTGGAAGGGCAGTTTGTGA GCACGGGGGGTTTCCAGGGAGGTGCAAACACCGTTAGATATTTGGATACATGCGAGGACTGCACTTGGAGAGAATACCCTACTGCTCTTTCTGCCCCAAG ATGGTACTCAACACAGGCCCAATTAGCAGACGGCAGGTTCATCGTAGTGGGAGGCAGAGACGCACATAGCTTCGAGTACATCCCGCCGGAAGGCAAACAA AACGACAAGCCCTTCTTCCTCGACTTGCTAAAGCAAACCCACGATCCAGAAGAGAACAATCTCTACCCATTCGTCTTCCTCTCCACCGACTCCAACGTCT TCATCTTCGCCAACAACCGTTCCGTCCTCCTCAACCCAAACACCAATACCGTCGTCAAGGAGTTCCCTGTTCTCCCAGGCGGCCACCGCAACTACCCCGC CAGTGGCATGTCCGTCATCCTCCCAATCGACCTCGACAACCCTAACTCCTCACCCGCCGCTGCCACTGTCCCCGCTGAAGTAATGGTCTGCGGTGGATCC GCCCACATCGACTCTTACGGCAAGGTCAGCCAGGGGATCTTCTACGAAACCCTAGAAGACTGCGGCCGCCTCAAAATCACAGATCCAAACCCTGTTTGGG AGCGAGATCTGATGCCTAGCCCTCGAATCATGGGCGATATGATGCTCTTACCTTCCGGAGAAGTCCTAATCGTTAACGGCGCTATGAGGGGAGCTTCCGG TTGGGGTTTCGCAAGGGACCCCAATTTCACCCCTTTGATCTACACCCCGGGAGCCAAATTCGGGACCAGATTCCGTCAACTGACTCCCTCCACAATCCCT AGAATGTACCATTCCTCCACCGTCGTCCTCCCCGACGCCAGGGTTATGATCTCCGGGAGCAACACAAACAACGGCTACATCTACGACGCCACGTACCCGA CGGAATTGAGGGTCGAGAAATTCTCGCCGCCTTACTTGGATCCTGCTCTGGCCTACAAAAGACCCGAGATCATGAACGGGGAAGCGATTGCCAAGTTTAG GTACAAGGCCAAGATTACGATTCAGGCGAAGCTGAATCCGACGGTGGCGTCGATTGTGCTGATGAATCTGAAGGTGACGATCAACGTGCCTGGGTTTAGT ACTCACGGCGTGACCATGAACCAGAGGTTGATAATGTTGGGGTTGGATTCGGCGAATCCGACGGCAGGGAAGGATGGGGTTTTCGACGTCGTTGCGAGGA CTCCTCCGAATAGTGCGGTGGCTCCGACGGGTTACTATATGCTAAGCGTTGTTTATCAGGGCGTTCCCAGCAAAGCCGTCTGGGTCCAGCTGAAGTGA
AA sequence Show only first row Show all	>Lus10043230 pacid=23168353 polypeptide=Lus10043230 locus=Lus10043230.g ID=Lus10043230.BGIv1.0 annot-version=v1.0 MKNKASYYLISLILLPALFMTAVVGTNTEGLFKRPRDFSLLNKEHVMGKHKLLGDPFGKPNDFKSRKIPDDVGTPMDPALKHVEQVAKEAQKEEKPQTLE LPNADDVGGGGKSKLGAKLKDRFVGGGESPLVSPGAYNGEWELFSKNSGVSAMHSILLPKVDKVLMYDSTIWRISNIMLPNGVCRALAEETGEKDCYAHS VWFDTHLDNLIPLELKTDTWCSSGGLTLEGQFVSTGGFQGGANTVRYLDTCEDCTWREYPTALSAPRWYSTQAQLADGRFIVVGGRDAHSFEYIPPEGKQ NDKPFFLDLLKQTHDPEENNLYPFVFLSTDSNVFIFANNRSVLLNPNTNTVVKEFPVLPGGHRNYPASGMSVILPIDLDNPNSSPAAATVPAEVMVCGGS AHIDSYGKVSQGIFYETLEDCGRLKITDPNPVWERDLMPSPRIMGDMMLLPSGEVLIVNGAMRGASGWGFARDPNFTPLIYTPGAKFGTRFRQLTPSTIP RMYHSSTVVLPDARVMISGSNTNNGYIYDATYPTELRVEKFSPPYLDPALAYKRPEIMNGEAIAKFRYKAKITIQAKLNPTVASIVLMNLKVTINVPGFS THGVTMNQRLIMLGLDSANPTAGKDGVFDVVARTPPNSAVAPTGYYMLSVVYQGVPSKAVWVQLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19580			glyoxal oxidase-related protei...		Lus10043230 [exp]	0	1
AT4G16295		SPH1	S-protein homologue 1 (.1)		Lus10029390 [exp]	3.0	0.9620
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10029913 [exp]	4.2	0.9620
					Lus10000400 [exp]	5.2	0.9620
					Lus10028233 [exp]	5.7	0.8916
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Lus10026877 [exp]	6.0	0.9620
AT5G65205			NAD(P)-binding Rossmann-fold s...		Lus10011729 [exp]	6.3	0.7981
AT4G29280		LCR22	low-molecular-weight cysteine-...		Lus10015983 [exp]	6.7	0.9620
AT1G23965			unknown protein		Lus10030641 [exp]	7.2	0.8986
AT5G18460			Protein of Unknown Function (D...		Lus10006860 [exp]	7.3	0.9620
					Lus10009372 [exp]	7.9	0.9620

Compare expression of checked genes

Lus10043230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.