Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19580 642 / 0 glyoxal oxidase-related protein (.1) AT1G67290 628 / 0 GLOX1 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) AT1G75620 424 / 4e-141 glyoxal oxidase-related protein (.1) AT1G19900 406 / 3e-134 glyoxal oxidase-related protein (.1) AT1G14430 401 / 4e-132 glyoxal oxidase-related protein (.1) AT3G57620 389 / 1e-127 glyoxal oxidase-related protein (.1) AT3G53950 372 / 4e-121 glyoxal oxidase-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011111 [exp] 1129 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Lus10034959 [exp] 798 / 0 AT1G67290 619 / 0.0 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10043230 [exp] 778 / 0 AT5G19580 620 / 0.0 glyoxal oxidase-related protein (.1) Lus10011109 [exp] 747 / 0 AT5G19580 622 / 0.0 glyoxal oxidase-related protein (.1) Lus10011110 [exp] 717 / 0 AT5G19580 597 / 0.0 glyoxal oxidase-related protein (.1) Lus10012979 [exp] 699 / 0 AT5G19580 619 / 0.0 glyoxal oxidase-related protein (.1) Lus10012981 [exp] 560 / 0 AT1G67290 412 / 3e-139 glyoxal oxidase 1, glyoxal oxidase-related protein (.1) Lus10015949 [exp] 429 / 7e-143 AT3G57620 654 / 0.0 glyoxal oxidase-related protein (.1) Lus10030798 [exp] 419 / 5e-139 AT1G14430 623 / 0.0 glyoxal oxidase-related protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G160800 [exp] 739 / 0 AT5G19580 668 / 0.0 glyoxal oxidase-related protein (.1) Potri.018G084200 [exp] 727 / 0 AT5G19580 655 / 0.0 glyoxal oxidase-related protein (.1) Potri.002G027000 [exp] 451 / 2e-151 AT1G75620 708 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G235500 [exp] 437 / 6e-146 AT1G19900 699 / 0.0 glyoxal oxidase-related protein (.1) Potri.001G083600 [exp] 435 / 2e-145 AT1G14430 520 / 2e-180 glyoxal oxidase-related protein (.1) Potri.005G235600 [exp] 425 / 3e-141 AT1G19900 692 / 0.0 glyoxal oxidase-related protein (.1) Potri.005G047701 [exp] 409 / 4e-135 AT3G57620 677 / 0.0 glyoxal oxidase-related protein (.1) Potri.013G034900 [exp] 407 / 1e-134 AT3G57620 670 / 0.0 glyoxal oxidase-related protein (.1) Potri.010G034200 [exp] 396 / 4e-130 AT1G14430 653 / 0.0 glyoxal oxidase-related protein (.1) Potri.016G103400 [exp] 377 / 4e-123 AT3G53950 801 / 0.0 glyoxal oxidase-related protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF09118 [flax] [poplar] DUF1929 Domain of unknown function (DUF1929) CL0159 [flax] [poplar] PF07250 [flax] [poplar] Glyoxal_oxid_N Glyoxal oxidase N-terminus
Representative CDS sequence Show only first row Show all	>Lus10043231 pacid=23168417 polypeptide=Lus10043231 locus=Lus10043231.g ID=Lus10043231.BGIv1.0 annot-version=v1.0 ATGGCGGAAACAAAAACACTATCCTTCCTCCTCATTTTCTCCTCTATTCCGCTCTTCTTCTTGTTGCTGTTAGCCCCCGCCACCACCACTGCCCACGGCG TGGTCGACCAAGCAGTTACCGAGGCAGAGGAGGCAAACGCGCCTCTACCCCCTGATGATTTCACCGACCCTAAAAAATACGAGGCCTTGAACCAGGACAA GGTCCTCGGCCCCCATGAGCTGTTCGGGAATCCGTTCGGGAACCCTGATGACTTCGAGAAGAAGAAGATAGCCGACGACATCGGGACACCCGTGGACAAG GAAATCGACGAACTCCTGACCAAGGACGCCCAACACAAGGTGGCAGCCAGCGGCACCGGTGCCAGCCTCACCGAGTCGGAGGTGAAGGCCCTCTCTGCCG ACGGCGGGTTGAAAGTGGAGGCCGGCGGCGCAGGAGGTGGTGCCACCGCGTTCGGGACGACTGGTGGAACTGCGGCCACGGCGAAGAAGGGCCCAACGAC CCACCTCGTGAACCCCACGGGGTTCAAGGGGAAGTGGGAGTTGTTTTGCAAGAATACCGGGGTTTCGTCCATGCATGCAATTTTGTTGCCCAAGGTTAAT AAGGTGTTGATGTACGACGCCACCATCTGGAGGATCTCCGGGATGAAGCTGCCCATCGGAGAATGTCGGCTGTTGGATGAGAAGACCGGCGAGAAGGATT GCTATGCTCATTCCGTTTTGCTTGACACCAATACCGCCAATATCACCCCGCTTGAGCTTCGTACGGATACCTGGTGCTCATCTGGAGGATTGACACTGGA AGGTAACCTAGTGAGTACGGGTGGTTTCCAAGGTGGTGCTAACACAGTGAGATACTTGGACACTTGCGCAAACTGTGATTGGAGGGAATACCCCACCGCC CTTGCCGCTCCTAGATGGTACGCTACGCAGGCTCAGCTGTCGGACGGGAGAATGATAGTGGTGGGAGGCAGAGACGCCCACAGTTACGAGTTCATCCCGG CGGAAGGGCAGCACAACCCAGCTCCGATCAACTTCAAGTTCCTAACCGAAACCATGGACAAGGACGAGAACAACCTCTACCCGTTCGTCCACCTCAGCAC CGATGGCAACGTGTTCATCTTCGCCAACAATCGCGGCGTCCTCCTCGACCCAAACACAAACGCCATCGTCAGGGAAGTCCCCCGCCTTCTAGGAGGCCAT CGCAATTACCCTGCCGCCGGCCAATCAGTCCTCCTCCCTTTGAAACTCCACGCTGGAAACAAGGGCCCCGTCGCCGCTGAGGTCCTCATCTGCGGTGGAT CCGCCCACGTTGATTCCTACACCAAGGCCAGCGAAGGAGTCTTCTATGCCGCCTTGCAGGATTGCGGTAGGATGCGAATCACCGACCCTAACCCGGTCTG GAAGAGAGAGCTCATGCCTTCGCCTCGATTGATGGGAGATATGTCGATCCTCCCTTCGGGAGAAGTCCTCCTCATCAACGGTGTTAAAAGGGGATCTTCA GGTTGGGGATTCGCCAGAGAGCCTAATTTCATCCCTGCTATCTACAATCCGAGAGTCAAAAGAGGCGAGCGGTTTATCGAACTTGCTCCGACGGACATTC CTAGGGTTTATCACTCCACCGCCACCGTTCTCCAGGACGGAAAGGTTCTGATTGCCGGAAGCAACACGAACAACGGATACGTCTACGATGCGATGTTCCC GACGGAATTGAGAGCCGAGAAATTCTCCCCGCCCTACCTGGACCCTGCACTAGAGAAATTCAAGCCGGTGATCGACCCTACGGTTGCTCCGGCGAAACTA GCGTATAACGAGAAGATCAACTTACAGATTAAGTTCAAAGACCCACAGCAGGTCGTGCAGCAGGATAATTTGAAGGTGACGATGTACGTGCCGGCTTTCA CCACCCACAGCGTGTCCATGAATATGAGGCTTTTGGATTTGGGCCTTGAGTCCGTCAGGCCCAATGGGGCTGGAGTTTATATTATTGATGTCTGGACCCC ACCGGATACCAAGGTTGCTCCCACCGGATATTACTTGATGTTTGTTGTTCACCAGGGAGTTCCTAGCGAAGGAATCTGGGTTCAGATTAACACCAAGTGA
AA sequence Show only first row Show all	>Lus10043231 pacid=23168417 polypeptide=Lus10043231 locus=Lus10043231.g ID=Lus10043231.BGIv1.0 annot-version=v1.0 MAETKTLSFLLIFSSIPLFFLLLLAPATTTAHGVVDQAVTEAEEANAPLPPDDFTDPKKYEALNQDKVLGPHELFGNPFGNPDDFEKKKIADDIGTPVDK EIDELLTKDAQHKVAASGTGASLTESEVKALSADGGLKVEAGGAGGGATAFGTTGGTAATAKKGPTTHLVNPTGFKGKWELFCKNTGVSSMHAILLPKVN KVLMYDATIWRISGMKLPIGECRLLDEKTGEKDCYAHSVLLDTNTANITPLELRTDTWCSSGGLTLEGNLVSTGGFQGGANTVRYLDTCANCDWREYPTA LAAPRWYATQAQLSDGRMIVVGGRDAHSYEFIPAEGQHNPAPINFKFLTETMDKDENNLYPFVHLSTDGNVFIFANNRGVLLDPNTNAIVREVPRLLGGH RNYPAAGQSVLLPLKLHAGNKGPVAAEVLICGGSAHVDSYTKASEGVFYAALQDCGRMRITDPNPVWKRELMPSPRLMGDMSILPSGEVLLINGVKRGSS GWGFAREPNFIPAIYNPRVKRGERFIELAPTDIPRVYHSTATVLQDGKVLIAGSNTNNGYVYDAMFPTELRAEKFSPPYLDPALEKFKPVIDPTVAPAKL AYNEKINLQIKFKDPQQVVQQDNLKVTMYVPAFTTHSVSMNMRLLDLGLESVRPNGAGVYIIDVWTPPDTKVAPTGYYLMFVVHQGVPSEGIWVQINTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19580			glyoxal oxidase-related protei...		Lus10043231 [exp]	0	1
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	6.6	0.7853
AT2G21240	BBR_BPC	BPC4, BBR/BPC4,...	basic pentacysteine 4 (.1.2)		Lus10035462 [exp]	7.9	0.7229
					Lus10020451 [exp]	12.0	0.7711
AT5G64250			Aldolase-type TIM barrel famil...		Lus10006545 [exp]	15.7	0.7843
AT1G23000			Heavy metal transport/detoxifi...		Lus10028529 [exp]	15.7	0.7578
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	15.8	0.7578
AT2G40435			unknown protein		Lus10010217 [exp]	16.6	0.7509
					Lus10041373 [exp]	18.0	0.7445
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10021795 [exp]	20.2	0.6935
AT1G79580	NAC	ANAC033, SMB, N...	NAC (No Apical Meristem) domai...		Lus10024006 [exp]	21.0	0.5664

Compare expression of checked genes

Lus10043231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.