Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28880 599 / 0 CKL3 casein kinase I-like 3 (.1) AT4G28860 593 / 0 CKL4 casein kinase I-like 4 (.1.2) AT4G26100 504 / 6e-178 CKL1, CK1 casein kinase 1 (.1) AT1G72710 498 / 2e-175 CKL2 casein kinase 1-like protein 2 (.1) AT5G57015 495 / 1e-174 CKL12 casein kinase I-like 12 (.1) AT1G03930 496 / 2e-174 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT2G19470 494 / 2e-174 CKL5 casein kinase I-like 5 (.1) AT5G44100 495 / 5e-174 CKL7 casein kinase I-like 7 (.1) AT4G28540 494 / 1e-173 CKL6, PAPK1 casein kinase I-like 6 (.1) AT3G23340 491 / 6e-173 CKL10 casein kinase I-like 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011113 [exp] 822 / 0 AT4G28880 596 / 0.0 casein kinase I-like 3 (.1) Lus10037621 [exp] 509 / 3e-180 AT1G72710 655 / 0.0 casein kinase 1-like protein 2 (.1) Lus10006879 [exp] 507 / 3e-179 AT1G72710 664 / 0.0 casein kinase 1-like protein 2 (.1) Lus10027628 [exp] 508 / 5e-179 AT4G26100 702 / 0.0 casein kinase 1 (.1) Lus10006018 [exp] 504 / 5e-178 AT1G72710 649 / 0.0 casein kinase 1-like protein 2 (.1) Lus10042570 [exp] 501 / 2e-176 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10022029 [exp] 499 / 8e-176 AT3G23340 649 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 499 / 1e-175 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 496 / 2e-174 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G084500 [exp] 709 / 0 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1) Potri.006G239900 [exp] 602 / 0 AT4G28880 594 / 0.0 casein kinase I-like 3 (.1) Potri.018G041000 [exp] 591 / 0 AT4G28880 589 / 0.0 casein kinase I-like 3 (.1) Potri.005G226900 [exp] 510 / 4e-180 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.018G065900 [exp] 508 / 5e-179 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 508 / 6e-179 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 507 / 1e-178 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.003G043500 [exp] 506 / 2e-178 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.002G036000 [exp] 505 / 3e-178 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.010G070400 [exp] 493 / 2e-173 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10043233 pacid=23168371 polypeptide=Lus10043233 locus=Lus10043233.g ID=Lus10043233.BGIv1.0 annot-version=v1.0 ATGGAAAGGATCGTCGGTGGAAAGTTCAAGCTCGGTCGCAAGATCGGCAGCGGATCATTTGGCGAAATATTCCTCGCTACTAATATCGATACGTATGAGA TCGTAGCGGTGAAGATCGAGAACAGTAAAACGAAGCACCCGCAGTTGCTTTACGAGGCCAAGCTTTACAATATTCTTCAAGGAGGAAGTGGCATTCCCAG CACAAAGTGGTCTGGTTTAGATAAGGAGGACCACGTGCTAGTTCTTGATTTGCTTGGGCCAAGCTTGGAGGACCTGTTTGTCTACTGTGGGCGGAAGTTC TCGCTCAAGACTGTGTTAATGTTGGCTGAGCAAATGATTACAAGGATTGAATATGTGCATTCAAAAGGTTATCTGCACAGAGACATTAAACCTGATAACT TCCTCATGGGTCTTGGTCGGAAAGCAAACCAGGTATACATAATTGATTTTGGGCTTGCAAAAAGATATAGAGATGCCACAACAAATCGACACATTCCTTA CAGAGAGAACAAGAACTTGACTGGAACTGCACGCTATGCAAGTTGCAATACTCATCTCGGCATTGAGCAGAGTCGACGTGATGATTTAGAGTCACTTGGC TACGTGTTACTATATTTTCTGAGGGGGAGCCTTCCATGGCAGGGTTTAAAAGCAGCTACGAAGAAGCAGAAGTATGATAAAATATGTGAAAAGAAAGTTT CTACTCCAATTGAGGTTCTGTGCAAATCTCATCCAGTGGAGTTTGCTTCCTACATGCATTATTGTCATTCACTGACGTTTGATCAACGGCCTGACTATGG GTTTTTGAAGCGGCTGTTTCGAGATCTGTTTGTACGTGAAGGATATGAGTTCGATTATGTATTTGATTGGACCATTCTAAAGTACCAGCCGGCACAGAAG CCTAGAACACAGCCTAGATTATCGCAGCAAGTTACTGGAACAAGTGGCAGCCATGTTGTTCGAGCAGAGAATGCAAATCAACAAGGAAGTAGCAACGCTG CTTATGCCTCTGAGGTTGTCCAATCTACTGGTCCTGGAATCCATATGCAATTCAAATCATCAACTGGAAAGAATTTGGTATCCGACAATCATGCTGACAG GAATGTTATGGGTGAGCCTCATATGCCTTCCAGTTCCTATTCATATGCTGGGGCATCAAGAAGAGCTGCTGTGAAACCAGGTGGATTACCCACTGAAGCA ACGAGTGGTCAGGGACACTCTAGTAAGGTTGGGCCATCTGGGAGCTGGATCTCGTCATTGCAACGTGTTCATTCTGCCAAATGA
AA sequence Show only first row Show all	>Lus10043233 pacid=23168371 polypeptide=Lus10043233 locus=Lus10043233.g ID=Lus10043233.BGIv1.0 annot-version=v1.0 MERIVGGKFKLGRKIGSGSFGEIFLATNIDTYEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSTKWSGLDKEDHVLVLDLLGPSLEDLFVYCGRKF SLKTVLMLAEQMITRIEYVHSKGYLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDATTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLG YVLLYFLRGSLPWQGLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYMHYCHSLTFDQRPDYGFLKRLFRDLFVREGYEFDYVFDWTILKYQPAQK PRTQPRLSQQVTGTSGSHVVRAENANQQGSSNAAYASEVVQSTGPGIHMQFKSSTGKNLVSDNHADRNVMGEPHMPSSSYSYAGASRRAAVKPGGLPTEA TSGQGHSSKVGPSGSWISSLQRVHSAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10043233 [exp]	0	1
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Lus10011113 [exp]	1.0	0.9454
AT3G02740			Eukaryotic aspartyl protease f...		Lus10036430 [exp]	3.5	0.8565
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10011238 [exp]	5.0	0.8573
AT5G01970			unknown protein		Lus10031947 [exp]	5.2	0.8620
AT5G20910		AIP2	ABI3-interacting protein 2, RI...		Lus10017865 [exp]	5.2	0.8465
AT3G54840		ARA6, AtRABF1, ...	Ras-related small GTP-binding ...		Lus10028820 [exp]	6.3	0.8496
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Lus10036196 [exp]	8.2	0.8647
AT1G24330			ARM repeat superfamily protein...		Lus10011370 [exp]	8.6	0.7945
AT1G30000		MNS3	alpha-mannosidase 3 (.1)		Lus10042830 [exp]	11.5	0.8203
AT5G52580			RabGAP/TBC domain-containing p...		Lus10038091 [exp]	12.0	0.8084

Compare expression of checked genes

Lus10043233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.