Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03170 98 / 3e-25 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G03160 85 / 9e-21 B3 unknown protein AT1G20600 80 / 2e-18 B3 AP2/B3-like transcriptional factor family protein (.1) AT5G24050 45 / 8e-06 B3 Domain of unknown function (DUF313) (.1) AT1G32030 45 / 1e-05 B3 Domain of unknown function (DUF313) (.1) AT2G27410 44 / 2e-05 B3 Domain of unknown function (DUF313) (.1) AT3G49610 43 / 4e-05 B3 Domain of unknown function (DUF313) (.1) AT3G24850 42 / 0.0001 B3 Domain of unknown function (DUF313) (.1) AT4G21550 41 / 0.0003 B3 HSI2-L2, VAL3 VP1/ABI3-like 3 (.1) AT1G68840 40 / 0.0005 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011114 [exp] 285 / 1e-99 AT4G03170 95 / 3e-24 AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G397100 [exp] 134 / 4e-39 AT4G03170 106 / 2e-27 AP2/B3-like transcriptional factor family protein (.1) Potri.014G135300 [exp] 41 / 0.0003 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.016G090300 [exp] 40 / 0.0004 AT4G30080 687 / 0.0 auxin response factor 16 (.1) Potri.010G129200 [exp] 40 / 0.0004 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.006G127500 [exp] 40 / 0.0005 AT4G30080 677 / 0.0 auxin response factor 16 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10043234 pacid=23168140 polypeptide=Lus10043234 locus=Lus10043234.g ID=Lus10043234.BGIv1.0 annot-version=v1.0 ATGGAGGAAGACAACAAAGAGCTCTCCAGAGCAGCTCTGCAGCTCATCGTTCTAATGTACTCCAAACCCGAACGCCAAAAAGCCCTCCCAATTCCCCCTG ACGAGAAAATCCCCAAACTAACGAGAGAGCAGCACTGGAGGCCTCCGCCGATCCGGCCGCCGGCGATTCCAGGGCTGCCGGAATTTCTCATCGGAGAGTG CACGGAGCCCTACGAGAAGCAGCTGACGGAGAGCGACGTGAATCCCAGCCAGGCGCGTCTGTCCCTCAGCAAGGACTACGCAAGGGACAGCATCCTTCCG CTGCTGAACTCGACCGAGGACGTCGTCAGAGGGATCCGCGTGACGGTGTACGACGCCGACGGAAAGGAGTTTCCGATGAAGCTGAAGCTGTGGGCGGAAA AGGTTTATGTGCTGACCAGCGGGTGGAGGCCGTTCGCGGAGGCTCATAGACTGGTTTCCCACGAGGATTACGTCGCCGTTTGGGTGTTTCGGAGGCTTGA TACGGGGAGTTTGTGCGTCGCTGTTACTTCGCGGCAGCTTCCCGTTTAA
AA sequence Show only first row Show all	>Lus10043234 pacid=23168140 polypeptide=Lus10043234 locus=Lus10043234.g ID=Lus10043234.BGIv1.0 annot-version=v1.0 MEEDNKELSRAALQLIVLMYSKPERQKALPIPPDEKIPKLTREQHWRPPPIRPPAIPGLPEFLIGECTEPYEKQLTESDVNPSQARLSLSKDYARDSILP LLNSTEDVVRGIRVTVYDADGKEFPMKLKLWAEKVYVLTSGWRPFAEAHRLVSHEDYVAVWVFRRLDTGSLCVAVTSRQLPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	0	1
					Lus10030782 [exp]	4.4	0.7261
AT2G27410	B3		Domain of unknown function (DU...		Lus10030994 [exp]	4.5	0.6730
AT1G18520		TET11	tetraspanin11 (.1)		Lus10009607 [exp]	5.7	0.6200
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	6.5	0.7208
AT5G49180			Plant invertase/pectin methyle...		Lus10003968 [exp]	9.6	0.7176
AT3G07120			RING/U-box superfamily protein...		Lus10038180 [exp]	15.2	0.6354
					Lus10013881 [exp]	17.7	0.6398
AT3G56960		PIP5K4	phosphatidyl inositol monophos...		Lus10010458 [exp]	22.4	0.6287
AT1G26730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10004284 [exp]	28.2	0.6062
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10016437 [exp]	30.4	0.6327

Compare expression of checked genes

Lus10043234 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.