Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28910 234 / 4e-72 NINJA novel interactor of JAZ (.1.2.3) AT3G29575 69 / 6e-13 AFP3 ABI five binding protein 3 (.1.3.4) AT3G07250 69 / 3e-12 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein (.1) AT1G13740 61 / 9e-10 AFP2 ABI five binding protein 2 (.1) AT1G69260 58 / 6e-09 AFP1 ABI five binding protein (.1) AT3G02140 55 / 6e-08 AFP4, TMAC2 TWO OR MORE ABRES-CONTAINING GENE 2, ABI FIVE BINDING PROTEIN 4, AFP2 (ABI five-binding protein 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011116 [exp] 791 / 0 AT4G28910 259 / 1e-81 novel interactor of JAZ (.1.2.3) Lus10022764 [exp] 67 / 8e-12 AT3G29575 113 / 2e-29 ABI five binding protein 3 (.1.3.4) Lus10036898 [exp] 63 / 1e-10 AT1G69260 200 / 2e-62 ABI five binding protein (.1) Lus10003145 [exp] 62 / 2e-10 AT3G29575 112 / 4e-29 ABI five binding protein 3 (.1.3.4) Lus10026667 [exp] 62 / 3e-10 AT1G13740 237 / 5e-76 ABI five binding protein 2 (.1) Lus10004645 [exp] 62 / 4e-10 AT1G13740 233 / 2e-74 ABI five binding protein 2 (.1) Lus10037084 [exp] 60 / 6e-10 AT1G13740 197 / 2e-61 ABI five binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085100 [exp] 402 / 3e-136 AT4G28910 324 / 3e-106 novel interactor of JAZ (.1.2.3) Potri.006G162900 [exp] 398 / 2e-134 AT4G28910 307 / 1e-99 novel interactor of JAZ (.1.2.3) Potri.008G096500 [exp] 63 / 1e-10 AT1G13740 240 / 6e-77 ABI five binding protein 2 (.1) Potri.010G157900 [exp] 61 / 9e-10 AT1G13740 229 / 1e-72 ABI five binding protein 2 (.1) Potri.017G094500 [exp] 60 / 1e-09 AT1G13740 169 / 1e-49 ABI five binding protein 2 (.1) Potri.004G120600 [exp] 58 / 5e-09 AT1G13740 176 / 5e-52 ABI five binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07897 [flax] [poplar] EAR Ethylene-responsive binding factor-associated repression
Representative CDS sequence Show only first row Show all	>Lus10043236 pacid=23168260 polypeptide=Lus10043236 locus=Lus10043236.g ID=Lus10043236.BGIv1.0 annot-version=v1.0 ATGGAGGATGAGAATGGTCTTGAACTTAGTTTAGGTCTAGGTTTTGGCGGATCATCCACCAAATGCAAGGGAAAAATTGGAAGCTCATTGGATATTGGGA CAGAAGTTGAGAAAGCAGACAAATCGAAAGAAGATTTTAAAGTTCTTCTTGGTGCCAGCCCTCTGAATCAAGATCCAGGCAGTGGATCTCATTCTCATAG GGGTGATTCGTCGAAACCACAAGAGAACTTCCACGACCTCACAAGTAGAAATGCTGATCGTGATGCATCATCCATAAGTCTGAATGCTAGAGGTCTCTGG GTTGGATCCAGTAACAGATCTGTGGGAATTGAAGATGAGAAGAGGATTGATGGAGGAGAAGGTAACAAACGTAAAGTAGATTTTGATGATGTAAACACTC AGAAGAGGCCAGAAAGGGATGGTGGTCACCGGGTTGATTTCCACGACAAGAAAGCATCACATATTTCCCTAACTGAAGATGGCTCCACTGCTGAAAATGA AGATGTAGCGGAGTCGGAAGTGGAGGGTTCAACCTCAAGGTTCGTTTCTCGGCATGATGCAAATGCTGGGGAGTTGCAAGATCAAAGAAGGCATAATGGT TTGCCAGAAAATGAATTTAAGCTTGGCATCAAATTTGGGGCGCCGTTTTCAGTCGAACCATCTAATGTCATGAGCATGTCCTACCAGTTCCCAGTGAAAG ATCACCATCCAGTTGGTTCAGCTAGCACTACGGGCATAGTTTCAACTTCGAACACTATCCAGACAGTAAATCCAGGTGGTTCGCCAATAACGTTTGGTTA CTCTCCTGTGCAGCTTCCAACCCTGGATAAAAATAATTCTTGGGGTTTGGTTTCTCAGCAACAACAAGTCCAGCCTCCGTATCAAGTCAAACCGACTGCA AACTCAGATAACCACAATGAACGACTAAGAATTTCTCAAGCCATGCAAATAATTGGTCGAAACCCCACCGAGGTATACGATTCTCGAGTATTTGATCGGC CGAAAGGTGATGGCAAACAACAAACCGGAGAACAAAGTTCCTCTTCCAAGGCCGAAAATGAAGCAAAGATCAGCGGCGCAAACGTAAGAGCGCACGATGG CCACGATCAACGAGCAGCCGATGGCTTCTCTCTCGACTTCTCCGCGATAAAGCCAGGCATTTCTCCAGATGTTAAGCTCGGAGGTTGCGGTTCGTACCCG AACCTACCTTGGGTTTCCACCACAGCTCCCGGACCAAACGGTAGAACCATTTCAGGGGTCACATACAGATACAGCCAGAGCCAAATAAGAATCGTTTGCG CTTGCCACGGTTCGCATATGTCCCCGGAGGAATTCATTCTCCATGCAAGTGATGGTAATGCCGCTGCTGCCGGTGAGGGTAACGATGGGGCAGGATCGGC GTCGGCTCAACGTAACAGTAACCCACCTGCATCTGCTCGTAGCTGA
AA sequence Show only first row Show all	>Lus10043236 pacid=23168260 polypeptide=Lus10043236 locus=Lus10043236.g ID=Lus10043236.BGIv1.0 annot-version=v1.0 MEDENGLELSLGLGFGGSSTKCKGKIGSSLDIGTEVEKADKSKEDFKVLLGASPLNQDPGSGSHSHRGDSSKPQENFHDLTSRNADRDASSISLNARGLW VGSSNRSVGIEDEKRIDGGEGNKRKVDFDDVNTQKRPERDGGHRVDFHDKKASHISLTEDGSTAENEDVAESEVEGSTSRFVSRHDANAGELQDQRRHNG LPENEFKLGIKFGAPFSVEPSNVMSMSYQFPVKDHHPVGSASTTGIVSTSNTIQTVNPGGSPITFGYSPVQLPTLDKNNSWGLVSQQQQVQPPYQVKPTA NSDNHNERLRISQAMQIIGRNPTEVYDSRVFDRPKGDGKQQTGEQSSSSKAENEAKISGANVRAHDGHDQRAADGFSLDFSAIKPGISPDVKLGGCGSYP NLPWVSTTAPGPNGRTISGVTYRYSQSQIRIVCACHGSHMSPEEFILHASDGNAAAAGEGNDGAGSASAQRNSNPPASARS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Lus10043236 [exp]	0	1
AT1G32330	HSF	ATHSFA1D	heat shock transcription facto...		Lus10000312 [exp]	2.0	0.7914
AT5G20200			nucleoporin-related (.1)		Lus10019408 [exp]	3.5	0.7845
AT5G62090		SLK2	SEUSS-like 2 (.1.2)		Lus10015002 [exp]	4.4	0.8244
AT5G49920			Octicosapeptide/Phox/Bem1p fam...		Lus10035772 [exp]	5.1	0.7457
AT5G47750		PK5, D6PKL2	D6 protein kinase like 2 (.1)		Lus10038753 [exp]	8.5	0.7944
AT4G00650		FLA, FRI	FLOWERING LOCUS A, FRIGIDA-lik...		Lus10043012 [exp]	24.9	0.7004
AT4G35870			early-responsive to dehydratio...		Lus10028409 [exp]	25.3	0.7674
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	25.8	0.7909
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Lus10019709 [exp]	29.0	0.7587
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	34.9	0.7795

Compare expression of checked genes

Lus10043236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.