Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20020 547 / 0 CAF1, ATCAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT1G23400 380 / 7e-125 CAF2, ATCAF2 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G31010 273 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) AT5G54890 256 / 6e-80 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G01370 64 / 2e-10 ATCFM2 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) AT3G18390 55 / 1e-07 EMB1865 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) AT4G29750 54 / 3e-07 CRS1 / YhbY (CRM) domain-containing protein (.1) AT3G23070 52 / 1e-06 ATCFM3A CRM family member 3A (.1) AT3G25440 49 / 6e-06 LOH1 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) AT4G14510 48 / 2e-05 ATCFM3B CRM family member 3B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011119 [exp] 1033 / 0 AT2G20020 598 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10012974 [exp] 596 / 0 AT2G20020 544 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10029134 [exp] 378 / 5e-124 AT1G23400 712 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10013029 [exp] 365 / 4e-117 AT1G23400 658 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10034952 [exp] 300 / 6e-96 AT2G20020 274 / 2e-85 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10041383 [exp] 282 / 6e-89 AT4G31010 526 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10040080 [exp] 259 / 2e-80 AT5G54890 484 / 2e-172 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Lus10036545 [exp] 235 / 2e-71 AT4G31010 446 / 8e-157 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Lus10019623 [exp] 204 / 1e-61 AT5G54890 318 / 4e-109 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163100 [exp] 579 / 0 AT2G20020 644 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G042500 [exp] 402 / 1e-133 AT1G23400 655 / 0.0 ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2, RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.014G074400 [exp] 285 / 3e-90 AT4G31010 501 / 1e-177 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1), RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.2) Potri.001G423800 [exp] 263 / 3e-82 AT5G54890 514 / 0.0 RNA-binding CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.001G350801 [exp] 71 / 1e-12 AT3G01370 972 / 0.0 Arabidopsis thaliana CRM family member 2, CRM family member 2 (.1) Potri.012G056100 [exp] 63 / 5e-10 AT3G18390 935 / 0.0 embryo defective 1865, CRS1 / YhbY (CRM) domain-containing protein (.1) Potri.010G077100 [exp] 59 / 1e-08 AT3G23070 927 / 0.0 CRM family member 3A (.1) Potri.014G176900 [exp] 49 / 7e-06 AT3G25440 411 / 9e-141 LAG One Homologue 1, RNA-binding CRS1 / YhbY (CRM) domain protein (.1), RNA-binding CRS1 / YhbY (CRM) domain protein (.2) Potri.017G116700 [exp] 47 / 5e-05 AT5G16180 638 / 0.0 ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1, ortholog of maize chloroplast splicing factor CRS1 (.1) Potri.013G083000 [exp] 46 / 5e-05 AT4G13070 331 / 9e-113 RNA-binding CRS1 / YhbY (CRM) domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01985 [flax] [poplar] CRS1_YhbY CRS1 / YhbY (CRM) domain
Representative CDS sequence Show only first row Show all	>Lus10043237 pacid=23168131 polypeptide=Lus10043237 locus=Lus10043237.g ID=Lus10043237.BGIv1.0 annot-version=v1.0 ATGATGGGCTTAGCCATGGCATTGAAGCTGCTCCAAATCCCATTTCCGATTACTGCTCCGCCGCCGGCAAGCTCGTCTCCGACTCCCAACCCATCGCCAT CGAAGCCTCATCTCCGCCATCCTACCACCGTGACCCGCTTCTCCCGTTGTAACAACGTCAACGCCCGACAATTCAAGGACAGGAAGGAAATCGAGGATGA CAGCCGCCGCGCCCACCGATTCGGTTCCGTCGATGCTAAAGATCCGACGACAACATCCCATGGCGGCAGGAGGAGTTTAAAGTCTGTATGGACGCCGTCT TCGCCACCCGGCCGGGGATCCCAATATTCGAAACCCACCGAAGGCGGCCAGAAACCCGCTCACCCGGCCTCCCGTAAGGCCCTCAAACGAGAGCAACCTA ATTATCGGAAAGCTGACGTCAAACTCAGCGAAGATGGGCTCTCTTACGTCATCAACGGGGCGCCGTTCGAGTTCAAGTACAGTTACACGGAGGCGCCGAA AATTAAGCCGCTGAAGTTAAGGGAGCCGCCTTTCTCGCCGTTTGGTCCCGTGACGATGCCTCGGCCGTGGACCGGAAGAGCTCCGCTTCCGCCTAGTAAG AAGAAGTTGAAGGAATTCGATTCGTTTCAGCCACCGCCACCGAATAAGAAAGGTGTCAAACCCGTCCAACCGCCGGGCCCTTTTCTGCCTGGAACGGGGC CGAGGTACGTGAATACAAGAGAGGAGATACTGGGAGAGCCATTGACGAAGGAGGAGATTAAGTCTTTACTCGAAGGCTGCGTCAAGTCCAGGCGGCAAAT GAATATGGGTAGAGATGGTTTGACTCACAACATGCTTGATAACATACATGCTCATTGGAAGCGGAAGAGGGTCTGCAAGATCAAATGCATGGGAGTTTGC ACTGTCGATTTGGACAATGTCTGTGAAGAACTCGAGCAAAGGACTGGAGGGAAGATCATTTACAAGAGAGGAGGAATGGTGTATCTATTCCGAGGGAGAA ACTATAATTACAGAACTCGAATCCGGCTCCCGCTCATGTTATGGAAACCTGCTCCTGCAGTGTATCCAAGGTTGGTCCAAAAAGCTCCAGCTGGTCTGAC ATTGGATGAAGCCTCCGAGATGCGGAAGAAGGGTCGAAGTTTGATTCCCATATGCAAACTTGGGAAAAATGGTGTGTACTCTTATCTGACTGATAATGTC AGAGAAGCATTTGAAGAGTGTGAATTGGTAAGAATCAATTGTCAGGGAATGAATGGAAGTGATTTCCGGAGAATCGGTGCCAAGTTAAGGGACCTTGTTC CATGTGTTCTAATCTCTTTTGAGGCTGAGCACATTCTGATGTGGAGAGGAAGGGACTGGAAGTCCTCCCCAACAAGATTGATGCCTATTGATGACCAAAA TGAAGAAACTATGATTAGTCCAGATACGAGCGAGAGCATGTTCGTTGAGGATACCAGCAATGGGAATGAAGTAGCAGAAGCAAGAATAGATGGTTGTGAT AATGCAGTAGAAAGCTCGGAACAAGGCTGGAAAAGTGTGCCATCTATGCAGGGAGTGATAGGGCTGTTGAACAAAGCTGTTGAAAATGGGGCTGCAATAC TGTTGGATGATGAGGAATTAGATGCTGACACTATCCGTAAGAGGACAGTTATCTTCTCCCAGTCAGCTACACCGTGTCCTGTATTCCAGTATCGGAGGCG AAGAATGAAACACAAACTGGAGAGAAACTGTTCGAATCAGGAAAGTGGAGATTCAGAGTATGAAGAAGTTCCAGCAGCGGCAGCAAGAGTAGAAGGGTTA GAATTAGCGGGTGAAACTCTTGAGGGAAGATTGGGAGTAGATGAACTTGCTAAGCTGCTACGATAG
AA sequence Show only first row Show all	>Lus10043237 pacid=23168131 polypeptide=Lus10043237 locus=Lus10043237.g ID=Lus10043237.BGIv1.0 annot-version=v1.0 MMGLAMALKLLQIPFPITAPPPASSSPTPNPSPSKPHLRHPTTVTRFSRCNNVNARQFKDRKEIEDDSRRAHRFGSVDAKDPTTTSHGGRRSLKSVWTPS SPPGRGSQYSKPTEGGQKPAHPASRKALKREQPNYRKADVKLSEDGLSYVINGAPFEFKYSYTEAPKIKPLKLREPPFSPFGPVTMPRPWTGRAPLPPSK KKLKEFDSFQPPPPNKKGVKPVQPPGPFLPGTGPRYVNTREEILGEPLTKEEIKSLLEGCVKSRRQMNMGRDGLTHNMLDNIHAHWKRKRVCKIKCMGVC TVDLDNVCEELEQRTGGKIIYKRGGMVYLFRGRNYNYRTRIRLPLMLWKPAPAVYPRLVQKAPAGLTLDEASEMRKKGRSLIPICKLGKNGVYSYLTDNV REAFEECELVRINCQGMNGSDFRRIGAKLRDLVPCVLISFEAEHILMWRGRDWKSSPTRLMPIDDQNEETMISPDTSESMFVEDTSNGNEVAEARIDGCD NAVESSEQGWKSVPSMQGVIGLLNKAVENGAAILLDDEELDADTIRKRTVIFSQSATPCPVFQYRRRRMKHKLERNCSNQESGDSEYEEVPAAAARVEGL ELAGETLEGRLGVDELAKLLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	0	1
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	2.0	0.8370
AT3G49142			Tetratricopeptide repeat (TPR)...		Lus10014746 [exp]	2.0	0.7957
AT1G71530			Protein kinase superfamily pro...		Lus10002469 [exp]	2.8	0.8300
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10021124 [exp]	4.0	0.7652
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	7.5	0.8203
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	9.2	0.7897
AT1G17980		PAPS1	poly(A) polymerase 1 (.1), pol...		Lus10009641 [exp]	9.9	0.6810
AT2G26790			Pentatricopeptide repeat (PPR)...		Lus10020298 [exp]	12.0	0.7213
AT1G72200			RING/U-box superfamily protein...		Lus10028454 [exp]	13.9	0.7196
AT4G12010			Disease resistance protein (TI...		Lus10016029 [exp]	14.1	0.7377

Compare expression of checked genes

Lus10043237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.