Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32790 493 / 7e-170 Exostosin family protein (.1) AT5G37000 468 / 7e-161 Exostosin family protein (.1) AT5G19670 468 / 9e-160 Exostosin family protein (.1) AT5G25820 453 / 2e-153 Exostosin family protein (.1) AT5G11610 422 / 5e-143 Exostosin family protein (.1.2) AT4G16745 407 / 4e-137 Exostosin family protein (.1.2) AT5G03795 311 / 6e-100 Exostosin family protein (.1) AT3G07620 293 / 9e-94 Exostosin family protein (.1) AT5G25310 282 / 3e-89 Exostosin family protein (.1) AT5G11130 280 / 2e-88 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011120 [exp] 950 / 0 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10000608 [exp] 473 / 1e-161 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 474 / 2e-161 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 473 / 3e-161 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 472 / 3e-161 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 472 / 4e-161 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 462 / 7e-160 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 452 / 2e-154 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 315 / 5e-101 AT5G03795 603 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085400 [exp] 568 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 483 / 2e-164 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 479 / 9e-163 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085500 [exp] 471 / 4e-160 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 471 / 2e-159 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 408 / 1e-137 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G170900 [exp] 322 / 1e-104 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.014G171100 [exp] 311 / 4e-100 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.018G025400 [exp] 304 / 2e-97 AT5G25310 518 / 0.0 Exostosin family protein (.1) Potri.006G118000 [exp] 303 / 7e-97 AT5G03795 608 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10043238 pacid=23168405 polypeptide=Lus10043238 locus=Lus10043238.g ID=Lus10043238.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCTGTCTGGATTCGAAGATCCAACGTTGGCAGCATAATTTGGAGGCTGCTGGTTATCATGGCAATGGCAGTTATTGCTCTGGTTCTTATTC TTGTTCAGCTCTCTTCTTCGCCTTTTGCCAATGGGAGAAATGGAACACCATGGTCTCCTTTAGTCGCTCGTGAAAATTTTTCCTGGGTTATTATTCCAGC CAACAACCCCGTAGTTTCAGATGACTCGAAGTTGGGTGAAATTCAGCACCGAAACGATTCATCCTCTTCACCATCATCCAAGATTGTAGAGAATGTTGGG GGTGAGATTGAATCAACCTCCAAAAACAGGAAAGTAGCTAGTGTATCCGCAGGCAAGAGGGTGGGAAGGAAGAATCCGACAACTATATCTCAGATGAACT CACAAATTCTTCACAGCCTTTTTTCAGCTACTTCTATGCTCCGTTCTGCAAGAATGCAGATAGAAAATGTTCCTATCTTGAAGTGGGATCCTGGACTCCA TGCTTCTAGTTTCTGGAATGTTTCCAGCTTTATGAGGAGCTATAAGTTGATGGAGCGAACGATGAAAGTGTACATCTACAAGGAAGGAGAGAAACCGGTG TTCCACCGGTCAAGGATGAGGGGGATATATGCTTCAGAGGGATGGTTCATGAAACTGATCAAGGAAAGCAAGAGGTTTGTTGTGAAAGACCCAAGAAAAG CTCACTTATTCTACATACCTTTTAGTTCAGAGATGTTGAGGAAAGAACTATACGGAAGCCCGACATTGCACACAGTTAAGGATCTTGAACAGCACTTGCA AGGCTATGTGAATCTAGTTTCACAAAAGTACATGTTTTGGAACAGAAGCAATGGAGCTGATCATTTCGTTGTCGGATGCCATGACTGGGCACCAAAATTG ACAAGCAATCCCATGAGGAGGTGCATCCGAGTCCTCTGCAATGCCAATGTAGGCAAGGGCTTCCGAATCGGAAAGGACACAACTTTGCCGGTGACAAGCA TACGGTCACAGGAGAGGCCTACACAGGATATCGGAGGGAAACCTCCCTCCGAAAGGCACATCCTTGCGTTCTTTGCCGGAGGAAGTCATGGCTCCCTCCG GCCAGTGCTACTACAGCACTGGGCCGCGGATAACAACGGACCCCACCAAACCATGAAGATCTTGGGTCCAATGCCGCGGGATGTCGAGAGCAAGAGACTG TACCGGGATTACATGAAGAGCAGCAAGTACTGCATCTGTGCCAGAGGTCACGAAGTCCACACACCTAGAGTGGTCGAGGCTATCTACTACGAGTGTGTCC CCGTCATAATCTCGGACAACTATGTTCCTCCATTCTTTGAGGTGCTCAACTGGGAGGAATTCGCTGTGTTTGTGTTGGAGAAAGACGTTCCTAAGTTGAA GGAGATTCTGTCGGCCATCCCGGAAGAGAAGTATTTGGCTATGCAGTCAAGTGTGAAGATGGTGCAGCAACATTTCTTGTGGCATAGGAAACCTCTAAAG TATGACTTGTTTCATATGATCCTTTACTCTGTTTGGCACAACCGAGTTTTCGAGGTAAAAGCCCTATGA
AA sequence Show only first row Show all	>Lus10043238 pacid=23168405 polypeptide=Lus10043238 locus=Lus10043238.g ID=Lus10043238.BGIv1.0 annot-version=v1.0 MAFAVWIRRSNVGSIIWRLLVIMAMAVIALVLILVQLSSSPFANGRNGTPWSPLVARENFSWVIIPANNPVVSDDSKLGEIQHRNDSSSSPSSKIVENVG GEIESTSKNRKVASVSAGKRVGRKNPTTISQMNSQILHSLFSATSMLRSARMQIENVPILKWDPGLHASSFWNVSSFMRSYKLMERTMKVYIYKEGEKPV FHRSRMRGIYASEGWFMKLIKESKRFVVKDPRKAHLFYIPFSSEMLRKELYGSPTLHTVKDLEQHLQGYVNLVSQKYMFWNRSNGADHFVVGCHDWAPKL TSNPMRRCIRVLCNANVGKGFRIGKDTTLPVTSIRSQERPTQDIGGKPPSERHILAFFAGGSHGSLRPVLLQHWAADNNGPHQTMKILGPMPRDVESKRL YRDYMKSSKYCICARGHEVHTPRVVEAIYYECVPVIISDNYVPPFFEVLNWEEFAVFVLEKDVPKLKEILSAIPEEKYLAMQSSVKMVQQHFLWHRKPLK YDLFHMILYSVWHNRVFEVKAL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32790			Exostosin family protein (.1)		Lus10043238 [exp]	0	1
AT4G03090			sequence-specific DNA binding;...		Lus10024746 [exp]	1.0	0.9050
AT4G21510			F-box family protein (.1)		Lus10022370 [exp]	1.4	0.8872
AT1G69630			F-box/RNI-like superfamily pro...		Lus10006319 [exp]	1.7	0.8456
AT5G53080			Tetratricopeptide repeat (TPR)...		Lus10005905 [exp]	3.7	0.8396
AT5G17620			unknown protein		Lus10001340 [exp]	4.5	0.8431
					Lus10024463 [exp]	4.9	0.8296
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	5.5	0.8353
AT1G26180			unknown protein		Lus10031917 [exp]	5.5	0.7930
AT3G17590		CHE1, BSH	BUSHY GROWTH, transcription re...		Lus10005562 [exp]	6.0	0.8086
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	6.2	0.8289

Compare expression of checked genes

Lus10043238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.