Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19670 702 / 0 Exostosin family protein (.1) AT5G25820 534 / 0 Exostosin family protein (.1) AT4G32790 525 / 0 Exostosin family protein (.1) AT5G11610 487 / 8e-167 Exostosin family protein (.1.2) AT4G16745 478 / 3e-163 Exostosin family protein (.1.2) AT5G37000 441 / 7e-149 Exostosin family protein (.1) AT5G03795 322 / 5e-103 Exostosin family protein (.1) AT3G07620 299 / 7e-95 Exostosin family protein (.1) AT5G25310 288 / 2e-90 Exostosin family protein (.1) AT5G11130 282 / 2e-88 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011121 [exp] 857 / 0 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10012973 [exp] 770 / 0 AT5G19670 716 / 0.0 Exostosin family protein (.1) Lus10034951 [exp] 767 / 0 AT5G19670 701 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 553 / 0 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 550 / 0 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 545 / 0 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10011120 [exp] 479 / 1e-163 AT4G32790 501 / 1e-172 Exostosin family protein (.1) Lus10043238 [exp] 471 / 6e-161 AT4G32790 493 / 7e-170 Exostosin family protein (.1) Lus10039142 [exp] 325 / 7e-104 AT5G03795 603 / 0.0 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085500 [exp] 728 / 0 AT5G19670 693 / 0.0 Exostosin family protein (.1) Potri.006G238900 [exp] 581 / 0 AT5G19670 592 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 569 / 0 AT5G25820 635 / 0.0 Exostosin family protein (.1) Potri.006G239000 [exp] 563 / 0 AT5G25820 607 / 0.0 Exostosin family protein (.1) Potri.018G085400 [exp] 550 / 0 AT5G19670 558 / 0.0 Exostosin family protein (.1) Potri.003G079000 [exp] 489 / 6e-168 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.014G171100 [exp] 341 / 1e-110 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.006G118000 [exp] 322 / 5e-103 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.014G170900 [exp] 310 / 4e-99 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.018G025400 [exp] 310 / 7e-99 AT5G25310 518 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10043239 pacid=23168281 polypeptide=Lus10043239 locus=Lus10043239.g ID=Lus10043239.BGIv1.0 annot-version=v1.0 ATGGGTTTCCAATTTCGACTACCCAACGTCTATCAGATCGATGCGAGAAAATGGCTAATTCTTCTGGGTACAGCCGTCATTGCTCAGGCAGTGTTCCATA TCCTAGTAATTTCATATGGCTACACCATTTGGCCTCTCCTTCCGACAAGCCAGGATTCCATGTTTGATCAAACTGTGATGACTTCGCGAGTGGAATCTTC CATCAACCCTGGAAGAATGGATGGTAATGCGTTACCACTTGATGCATCAAGCTCCTATGGCAATTTGCAGATTAGAGTTCTCGTGAGAAATGATGAAAAA TTTGATATTGAGGATTCAGGTGTTACCAGTGAAGTGAATGTACATCACAATGATGATGATGATCACGGTGAAGTTGCAGTGGATAGGGACGTGGTTGTTG ATGATGATGATGACAATGATGTTCGGGTGGATGGGAATGCGGTTACTCGAGAGAGAGATTCTGTTATGGAGTTGCTTAGTGAACCCAAAAAGGACATTTC TACAATGAAGAAGATCAAAGAAGAAACAAGTGTTCGGATTTTAGTTTCAGGAAACACTTCTGCTGGAGTTAGTATACATGCGAAGAAAAAGATGAGGTGT GAGATGCCACCAAAATCAGTTACAACATTTGACGAGATGAACCATTTGTTAGCAAGGCGTCGCCGTTCTTCTCGGGCAATGAGACCAAGATGGTCTTCGG CACGTGATAAGGAGATTTTGGCTATGAAGTCACAGATTGAAAATGCAGCTGTGCTGGTGAAAGATCCAGATCTTTATGCTCCACTCTTCAGAAACGTTTC CCAGTTCAAAAGGAGTTATGAGCTTATGGAACGCACACTGAAGGTCTATGTATACAAGGATGGAAATAAGCCAATCTTTCATCTACCAATACTGAAGGGA TTGTATGCTTCAGAAGGATGGTTTATGAAGCTAATGGAAGGAAGTAAGCGATTTTTGGTGAAGGACCCTCGAAAGGCACACTTGTTCTATATGCCATTCA GTTCACGAATGCTCGAGTACACTCTCTACGTACGGAATTCACATAATAGGACGAATCTACGTCAGTACCTAAAAGAGTATGCAGATCTAATTGCAGCCAA GTATCCCTATTGGAACCGAACTGGTGGAGCTGACCATTTTCTTGTTGCCTGCCATGATTGGGCTCCATACGAGACGAGGCACCATATGGAACATTGTCCT AAAGCCCTCTGCAATGCTGATGTTACGACAGGCTTCAAAATAGGGAGGGACGTATCTCTTCCCGAAACGTACGTCCGAGCAGCCACTAATCCTCTCCGCG ACCTAGGAGGGAAACCGCCTTCCGAAAGGCACATTCTTGCCTTCTATGCTGGGAGTATGCACGGATATCTTCGTCAAATTCTAATCAAGCACTGGAAAGA CAAGGACCCCGATATGAAGATATGGGGTCGTATGCCTCTTGGTGTAGCAAGCAAAATGAACTACATCAGCCACATGAAGAGCAGCAAGTACTGTATATGC CCTAAAGGTTACGAGGTCAACAGCCCGCGAGTCGTCGAGTCCATCTTCTACGAATGTGTGCCTGTTATCATATCGGACAACTTCGTGCCACCGTTTTTCG AGGTGTTCGATTGGAGCGCCTTCTCGATTATTCTTGCAGAGAAAGACATTCCTAATCTGAAAGAGATTTTGCTCTCCGTACCGGAAAAACGATACATTGA ACTGCAACTAGGGGTGAGGAAGGTTCAAAGGCATTTCCTTTGGCATGCAAAGCCTGTGAAATATGATCTCTTTCTCATGACCCTTCATTCAATTTGGTAT AATCGAGTTTATCAGATCAAACCACGATGA
AA sequence Show only first row Show all	>Lus10043239 pacid=23168281 polypeptide=Lus10043239 locus=Lus10043239.g ID=Lus10043239.BGIv1.0 annot-version=v1.0 MGFQFRLPNVYQIDARKWLILLGTAVIAQAVFHILVISYGYTIWPLLPTSQDSMFDQTVMTSRVESSINPGRMDGNALPLDASSSYGNLQIRVLVRNDEK FDIEDSGVTSEVNVHHNDDDDHGEVAVDRDVVVDDDDDNDVRVDGNAVTRERDSVMELLSEPKKDISTMKKIKEETSVRILVSGNTSAGVSIHAKKKMRC EMPPKSVTTFDEMNHLLARRRRSSRAMRPRWSSARDKEILAMKSQIENAAVLVKDPDLYAPLFRNVSQFKRSYELMERTLKVYVYKDGNKPIFHLPILKG LYASEGWFMKLMEGSKRFLVKDPRKAHLFYMPFSSRMLEYTLYVRNSHNRTNLRQYLKEYADLIAAKYPYWNRTGGADHFLVACHDWAPYETRHHMEHCP KALCNADVTTGFKIGRDVSLPETYVRAATNPLRDLGGKPPSERHILAFYAGSMHGYLRQILIKHWKDKDPDMKIWGRMPLGVASKMNYISHMKSSKYCIC PKGYEVNSPRVVESIFYECVPVIISDNFVPPFFEVFDWSAFSIILAEKDIPNLKEILLSVPEKRYIELQLGVRKVQRHFLWHAKPVKYDLFLMTLHSIWY NRVYQIKPR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19670			Exostosin family protein (.1)		Lus10043239 [exp]	0	1
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	3.0	0.9030
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030600 [exp]	4.9	0.8907
AT2G18245			alpha/beta-Hydrolases superfam...		Lus10014294 [exp]	14.0	0.7936
AT1G50575			Putative lysine decarboxylase ...		Lus10003762 [exp]	14.3	0.8752
AT4G36720		HVA22K	HVA22-like protein K (.1)		Lus10010093 [exp]	16.3	0.8740
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	16.8	0.8880
AT2G16720	MYB	AtY49, AtMYB7	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10028435 [exp]	17.0	0.8798
AT5G19670			Exostosin family protein (.1)		Lus10011121 [exp]	18.5	0.8212
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Lus10027086 [exp]	19.4	0.8559
AT5G54890			RNA-binding CRS1 / YhbY (CRM) ...		Lus10019623 [exp]	19.5	0.8671

Compare expression of checked genes

Lus10043239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.