Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19690 1156 / 0 STT3A staurosporin and temperature sensitive 3-like A (.1) AT1G34130 638 / 0 STT3B staurosporin and temperature sensitive 3-like b (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011124 [exp] 1334 / 0 AT5G19690 1266 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Lus10041985 [exp] 657 / 0 AT1G34130 1312 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Lus10017990 [exp] 654 / 0 AT1G34130 1264 / 0.0 staurosporin and temperature sensitive 3-like b (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086000 [exp] 1194 / 0 AT5G19690 1157 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Potri.012G036300 [exp] 654 / 0 AT1G34130 1256 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.015G028300 [exp] 647 / 0 AT1G34130 1245 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.006G163566 [exp] 0 / 1 AT5G19690 209 / 9e-63 staurosporin and temperature sensitive 3-like A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02516 [flax] [poplar] STT3 Oligosaccharyl transferase STT3 subunit
Representative CDS sequence Show only first row Show all	>Lus10043241 pacid=23167931 polypeptide=Lus10043241 locus=Lus10043241.g ID=Lus10043241.BGIv1.0 annot-version=v1.0 ATGGCCATTCGGAACCCAAGGATGAACGATATTGCGCTCCTTGGGAAGGTTGCGTGGAAGATCCTCTCGGCTGCCGGCGCCCACTTTACTCCTTCATCTT CTGTCTCCGCGATGGGGAGTCCGGACAGCACCAACGATTCGCTGGCCACGGCGTCCAGTCTGCGAAATGCGTTCGGCGGCGTTCTCTCTTTCATCATACT CCTTCTGATCGGAGTCCTCGCCTTCTCGATCCGCCTCTTTTCCGTGATAAAATATGAAAGCGTGATTCACGAGTTTGATCCTTACTTCAATTATCGGGTT ACTCAGTTTTTATCGAAGAATGGGATATACGACTTTTGGAACTGGTTTGATGATCGAACATGGTATCCTCTTGGGCGAGTCATTGGTGGAACTGTTTTTC CCGGTTTGATGTTGACAGCTGGCACAATGTGGAAGGTCCTGAATTCCTTGAACATTCCTCTCTCTGTGGAGACTGTCTGTGTGTTTACTGCACCAATTTT CTCCGCGTTTGCTTCCTGGGCAGCTTATCTATTGACCAAAGAAGTTAAAGGTCCTGGGGCTGGACTCGCAGCAGCAACACTCTTGGCCATGGTTCCATCA TACATATCTCGCTCTGTGGCTGGGAGCTATGACAATGAAGCTGTTGCTATATTTGCATTAGTCTTCACCTTCTATCTTTATATCAAGACAATAAATACAG GGTCCCTTTTCTATGCAACTCTGAATTCCCTAGCTTACTTTTATATGGTCTGCTCATGGGGTGGTTACACCTTCATTATTAACCTGATTCCAATGCACGT GATGCTCTGCATTGTGACGGGTCGTTATTCTTCTCGGCTGTACATTGCGTATGCACCTCTTGTCTTCATTATTATCCATGTTGTGGCCCTTGTGCACTAC ATTAAAGGGATCCTCTCTCCAAAAATGTTCAAAGTTGCTGTGACACTTGTTGTTTCTGTTGGCCTAGCAGTCTGTTTTGCGGTGATTGGAGTTCTTATAG CAGTGGTGGCATCAAGCCCAACGAAGGGATGGAGTGGGCGTAGTTTAACTCTCCTTGACCCGACTTATGCAAGCAAATACATTCCAATTATTGCTAGTGT TAGTGAACATCAACCTCCTACTTGGCCATCATACTTCATGGACATCAATGTTTTAGCTTTCTTGGTTCCAGCTGGGATCATCGCCTGCTTCATGCCCTTA TCCGACTCAAGTTCTTTCCTCATCCTTTACATTGTGACTTCTGTTTACTTTTCTGGTGTCATGGTACGGCTGATGCTTGTACTTGCCCCAGCCGCATGCA TTTTGTCTGGAATTGCACTTTCTGAAGCTTTTAATGTGTTGACTCGGTCAATCAAGTTTCAGCTACCTGGAATGGCAGGGATCTCCAATGTTGCTAAGGA AAATGGTTCAAGTTCTGCGGTGGCACAAGAAAATGCACCAAAGACTGAAGAAGTTCCAAAAGAAAAACCACAGAGAAAGAACAAGAAAAAAGAAAAAGAG AATGCAGAGAAGGTGGAGAAGGTGCCCACGCCAGCAAAAACTGAGAGAAGGCTTCTCGTACTACCTTTGGAAGCGTCATTCATTGCAGTTCTCTTAATTG TGTTGCTTGGTGCCTTCTATGTGGTTCATTGTGTATGGGCAGCAGCAGAAGCATATTCAGCCCCTTCGATCGTTCTAACATCTTACTCAAATGATGGTGG CTTGCATGTCTTTGACGATTTTAGAGAGTCCTATGCTTGGTTGAGCCACAATACTGATGTAGATGACAAAGTTGCATCATGGTGGGACTATGGTTATCAA ACAACTGCGATGGCAAACCGCACTGTTCTCGTCGATAATAACACATGGAACAACACACATATCGCAACTGTTGGTACTGCCATGTCATCTCCTGAGAAAC AAGCCTGGGAAATCTTCCATTCACTGGACGTGAAATATGTTCTAGTAGTCTTTGGAGGTCTTGTTGGCTATCCTAGTGATGACATCAACAAGTTCCTGTG GATGGTTCGAATAGGAGGGGGCGTATTCCCGCACATCAAAGAACCAGATTACCTGAGAGATGGGCAGTACAGGATAGACAATCAAGCTACTCCAACGATG TTGAACTCTCTTATGTACAAACTGTCATACTACAGGTTTGTTGAAACAGACGGGAAAGGATTTGACAGAGTGAGAAGAACAGAGATAGGGAAGAAACATT TCAAGCTTACTCATTTCGAAGAGGTATTCACCACTCACCATTGGATGGTTCGGATTTACAAACTGAAAGCGCCAAGGAACAGGATCCGTGGAAAGACTAA GAAATCGAAATCATCGAAATCAGTAAGCTCAAAGAGAGATGGAAGGGAAAGGAGGAATCCATGGCACTAA
AA sequence Show only first row Show all	>Lus10043241 pacid=23167931 polypeptide=Lus10043241 locus=Lus10043241.g ID=Lus10043241.BGIv1.0 annot-version=v1.0 MAIRNPRMNDIALLGKVAWKILSAAGAHFTPSSSVSAMGSPDSTNDSLATASSLRNAFGGVLSFIILLLIGVLAFSIRLFSVIKYESVIHEFDPYFNYRV TQFLSKNGIYDFWNWFDDRTWYPLGRVIGGTVFPGLMLTAGTMWKVLNSLNIPLSVETVCVFTAPIFSAFASWAAYLLTKEVKGPGAGLAAATLLAMVPS YISRSVAGSYDNEAVAIFALVFTFYLYIKTINTGSLFYATLNSLAYFYMVCSWGGYTFIINLIPMHVMLCIVTGRYSSRLYIAYAPLVFIIIHVVALVHY IKGILSPKMFKVAVTLVVSVGLAVCFAVIGVLIAVVASSPTKGWSGRSLTLLDPTYASKYIPIIASVSEHQPPTWPSYFMDINVLAFLVPAGIIACFMPL SDSSSFLILYIVTSVYFSGVMVRLMLVLAPAACILSGIALSEAFNVLTRSIKFQLPGMAGISNVAKENGSSSAVAQENAPKTEEVPKEKPQRKNKKKEKE NAEKVEKVPTPAKTERRLLVLPLEASFIAVLLIVLLGAFYVVHCVWAAAEAYSAPSIVLTSYSNDGGLHVFDDFRESYAWLSHNTDVDDKVASWWDYGYQ TTAMANRTVLVDNNTWNNTHIATVGTAMSSPEKQAWEIFHSLDVKYVLVVFGGLVGYPSDDINKFLWMVRIGGGVFPHIKEPDYLRDGQYRIDNQATPTM LNSLMYKLSYYRFVETDGKGFDRVRRTEIGKKHFKLTHFEEVFTTHHWMVRIYKLKAPRNRIRGKTKKSKSSKSVSSKRDGRERRNPWH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19690		STT3A	staurosporin and temperature s...		Lus10043241 [exp]	0	1
AT5G19690		STT3A	staurosporin and temperature s...		Lus10011124 [exp]	3.9	0.7712
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	5.5	0.7439
AT5G19050			alpha/beta-Hydrolases superfam...		Lus10004426 [exp]	6.0	0.7129
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	7.1	0.7548
AT2G19600		ATKEA4	K+ efflux antiporter 4, K+ eff...		Lus10040549 [exp]	8.5	0.7531
AT1G73430			sec34-like family protein (.1....		Lus10015940 [exp]	17.9	0.7524
AT3G26700			Protein kinase superfamily pro...		Lus10002882 [exp]	21.2	0.6925
AT2G20800		NDB4	NAD(P)H dehydrogenase B4 (.1)		Lus10039768 [exp]	30.0	0.6859
AT4G01210			glycosyl transferase family 1 ...		Lus10008732 [exp]	32.2	0.7348
AT1G72880			Survival protein SurE-like pho...		Lus10037627 [exp]	32.5	0.6829

Compare expression of checked genes

Lus10043241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.