Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19650 103 / 2e-26 OFP ATOFP8, OFP8 ovate family protein 8 (.1) AT2G18500 93 / 2e-21 OFP ATOFP7, OFP7 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) AT3G52525 84 / 2e-19 OFP ATOFP6, OFP6 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) AT2G36026 79 / 2e-17 OFP Ovate family protein (.1) AT2G30400 80 / 7e-17 OFP ATOFP2, OFP2 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 2, ovate family protein 2 (.1) AT1G06920 79 / 2e-16 OFP ATOFP4, OFP4 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) AT5G58360 78 / 3e-16 OFP ATOFP3, OFP3 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, ovate family protein 3 (.1) AT5G01840 77 / 5e-16 OFP AtOFP1 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) AT2G36030 70 / 2e-15 unknown protein AT4G18830 71 / 1e-13 OFP ATOFP5, OFP5 ovate family protein 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011092 [exp] 430 / 1e-152 AT5G19650 99 / 3e-24 ovate family protein 8 (.1) Lus10041730 [exp] 90 / 2e-20 AT2G18500 134 / 3e-37 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Lus10025241 [exp] 89 / 4e-20 AT1G06920 112 / 2e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10006092 [exp] 89 / 8e-20 AT5G01840 121 / 5e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10008589 [exp] 86 / 4e-19 AT5G01840 120 / 6e-32 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10042224 [exp] 86 / 7e-19 AT5G01840 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, ovate family protein 1 (.1) Lus10021302 [exp] 82 / 3e-18 AT3G52525 120 / 2e-34 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Lus10014164 [exp] 82 / 3e-18 AT1G06920 104 / 3e-27 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1) Lus10015236 [exp] 79 / 2e-16 AT4G18830 112 / 1e-27 ovate family protein 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G080100 [exp] 190 / 8e-59 AT5G19650 107 / 8e-28 ovate family protein 8 (.1) Potri.006G156176 [exp] 165 / 3e-49 AT5G19650 104 / 8e-27 ovate family protein 8 (.1) Potri.006G158800 [exp] 125 / 6e-34 AT5G19650 0 / 1 ovate family protein 8 (.1) Potri.007G028000 [exp] 105 / 9e-26 AT2G18500 114 / 4e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.005G125200 [exp] 102 / 1e-24 AT2G18500 111 / 7e-28 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7, ovate family protein 7 (.1) Potri.002G262500 [exp] 96 / 3e-22 AT5G19650 94 / 2e-22 ovate family protein 8 (.1) Potri.009G161700 [exp] 87 / 1e-20 AT3G52525 61 / 6e-12 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 6, ovate family protein 6 (.1) Potri.016G072800 [exp] 85 / 2e-19 AT2G36026 118 / 1e-33 Ovate family protein (.1) Potri.006G205400 [exp] 82 / 2e-18 AT2G36026 115 / 3e-32 Ovate family protein (.1) Potri.006G107700 [exp] 84 / 4e-18 AT1G06920 116 / 2e-29 ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4, ovate family protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04844 [flax] [poplar] Ovate Transcriptional repressor, ovate
Representative CDS sequence Show only first row Show all	>Lus10043243 pacid=23168328 polypeptide=Lus10043243 locus=Lus10043243.g ID=Lus10043243.BGIv1.0 annot-version=v1.0 ATGGAAAACCGATTCAAGACCAGGATCTCTCGTATGTTCGGGAAACCATTCGGATCCTCTTGCCGTACCCGAAACTTATCCTCCGACGTCGTAGAGAAAG CCGCCTTCCTTCCTCACCAACAACAACGTATTTCCAACGACGGAAGTGGAAGCTGCAGATTCTCCCCTGTTTCTCCTCCCAAAAAGAATCGGCCTTTCCC GACGACGATATGTAGCAGAGCCACGTGTCCCGAAGCTGCCGCCACTCGTGTCATCAATCATTGTACCATTTCCGCCTCCTCGGCCCGCCGCCGGAGCCGA CAAGGAGTCAAATCTGGTCGTCCTGTTCCTGCAAGCTCCCCTGTTTCCCCCTTGACTCATTCCTACTACGAGAAAAAACAGAGCACCAAAAAGCAGGGGA AAAACAACAACAACAAGAAGAAAAAACAGACCACGTTCCAGAGGCGAGAAATCAGTTCCCTTTTCAGCTCGTCGTCCCTGGACAGCGCGTATTTCGGACG GAGTTACTACTGGTTTAGTACTGGCGATGAGAAGGAAGAAGACGTAGAGTTAAATGGGTATGAGAACGACGACGAATCCGACACTCTGTTTTTCTCTTCG AGAAGCTTCTCCTCCTCCGACTCATCGACTGTTTCCGCTCTGAAAAAAAATCAGACTGGCGGGAAGAAGTACAAGAGTGAGGAGGAGGAGGAAATCGGAG TGCTGCAGAAAGTGAAGGGGAGCTTTGCGGTGGTGAAGAGCTCGAGCGATCCTTACAACGATTTCAGGAAGTCGATGGTGGAGATGATAGTAGAGAAGCA GATATTCGGGGCCAAGGATTTGGAGCAGCTGTTGCAGTGTTTCTTGTCGCTTAACGCAGATCGTCACCATAGGATCATTGTGGAGGTGTTCACTGATATT TGGGAGACATTGTTCTCCAATTGGTCTTTTGATTAG
AA sequence Show only first row Show all	>Lus10043243 pacid=23168328 polypeptide=Lus10043243 locus=Lus10043243.g ID=Lus10043243.BGIv1.0 annot-version=v1.0 MENRFKTRISRMFGKPFGSSCRTRNLSSDVVEKAAFLPHQQQRISNDGSGSCRFSPVSPPKKNRPFPTTICSRATCPEAAATRVINHCTISASSARRRSR QGVKSGRPVPASSPVSPLTHSYYEKKQSTKKQGKNNNNKKKKQTTFQRREISSLFSSSSLDSAYFGRSYYWFSTGDEKEEDVELNGYENDDESDTLFFSS RSFSSSDSSTVSALKKNQTGGKKYKSEEEEEIGVLQKVKGSFAVVKSSSDPYNDFRKSMVEMIVEKQIFGAKDLEQLLQCFLSLNADRHHRIIVEVFTDI WETLFSNWSFD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10043243 [exp]	0	1
					Lus10000191 [exp]	12.3	0.8793
AT2G26520			unknown protein		Lus10032762 [exp]	13.4	0.8455
AT2G20710			Tetratricopeptide repeat (TPR)...		Lus10033698 [exp]	17.0	0.8403
AT3G58690			Protein kinase superfamily pro...		Lus10017647 [exp]	21.0	0.8637
AT1G31710			Copper amine oxidase family pr...		Lus10004912 [exp]	22.2	0.7876
					Lus10039879 [exp]	22.2	0.8630
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Lus10028754 [exp]	27.7	0.8637
AT5G17510			unknown protein		Lus10024530 [exp]	30.1	0.7647
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	32.0	0.8608
AT4G32980	HD	ATH1	homeobox gene 1 (.1)		Lus10026432 [exp]	41.4	0.8584

Compare expression of checked genes

Lus10043243 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.