Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18190 119 / 9e-31 Protein kinase family protein (.1) AT3G03940 115 / 1e-29 Protein kinase family protein (.1) AT2G25760 114 / 3e-29 Protein kinase family protein (.1.2) AT3G13670 108 / 5e-27 Protein kinase family protein (.1) AT3G03930 96 / 1e-23 protein kinase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025827 [exp] 118 / 2e-30 AT2G25760 1030 / 0.0 Protein kinase family protein (.1.2) Lus10023628 [exp] 109 / 2e-27 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10024261 [exp] 109 / 3e-27 AT3G03940 961 / 0.0 Protein kinase family protein (.1) Lus10005479 [exp] 109 / 3e-27 AT2G25760 1093 / 0.0 Protein kinase family protein (.1.2) Lus10039203 [exp] 105 / 5e-26 AT3G13670 1132 / 0.0 Protein kinase family protein (.1) Lus10042455 [exp] 105 / 5e-26 AT3G13670 1124 / 0.0 Protein kinase family protein (.1) Lus10037565 [exp] 104 / 1e-25 AT2G25760 977 / 0.0 Protein kinase family protein (.1.2) Lus10014152 [exp] 104 / 1e-25 AT2G25760 985 / 0.0 Protein kinase family protein (.1.2) Lus10011091 [exp] 100 / 3e-24 AT5G18190 970 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G189100 [exp] 117 / 2e-30 AT2G25760 1051 / 0.0 Protein kinase family protein (.1.2) Potri.019G034500 [exp] 117 / 3e-30 AT3G03940 1207 / 0.0 Protein kinase family protein (.1) Potri.003G049700 [exp] 113 / 9e-29 AT2G25760 1041 / 0.0 Protein kinase family protein (.1.2) Potri.018G046400 [exp] 111 / 3e-28 AT2G25760 1129 / 0.0 Protein kinase family protein (.1.2) Potri.006G236600 [exp] 110 / 6e-28 AT2G25760 1095 / 0.0 Protein kinase family protein (.1.2) Potri.003G215700 [exp] 107 / 2e-26 AT3G13670 1060 / 0.0 Protein kinase family protein (.1) Potri.001G009700 [exp] 106 / 2e-26 AT3G13670 1100 / 0.0 Protein kinase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043244 pacid=23168077 polypeptide=Lus10043244 locus=Lus10043244.g ID=Lus10043244.BGIv1.0 annot-version=v1.0 ATGTCGTCTGAATCACCGTCATGGTTGGGTTGCAGATTCTTGGCTCAGTTGCATTGCATCCGGCTACAGTCTGGCGGGCGTCTACTATCCAACCATGACC ATGGGGCCCGCTACACTCTTTTGTGGGGGAGGCTGTGGAAGGCTCGGAACTTGGTTGTCTTTGAGCGTCGACAATTGCAGCCTGCGATCCGCATCTTCTA CCGTAAGATCTCTGATCTATCCCTGCTTTCGACAGCCACAAATCCCCCGATGATTGTTCCCCCAGCTATACTCTTGGTGGTCCGGTTCCCCCCACTCGCT CCCCTTATTAAAATCAATGTGGATGGTGCGGTGGCTGATCTGGTTGGCGATGCGCTTGGTCTAGTGGTGGTTGAACTCGATTTCCTGTATCCTAGTGACG GGATCAACAGGAGATGGTACAATGGATATCGAATAACTGCATCTTCTGCTACAGCTGACCAGGCTGCATTCATACTTAGCAAACCCAAGAAGAAATTACC AGAAGCTGCTCAAGAAACCTTGAGGACATCTGCCTTTCCTAGTACCCATGTTAAGGATAAATGGTCAAAGAATCTGTACATAGGCTTCGATATGTTATGG AAGAACCGTATCCTGAAGCTGGTGGTTTCGAGGGACGAAGGGGCCGGCCAGCCTTCTCCCAACTGA
AA sequence Show only first row Show all	>Lus10043244 pacid=23168077 polypeptide=Lus10043244 locus=Lus10043244.g ID=Lus10043244.BGIv1.0 annot-version=v1.0 MSSESPSWLGCRFLAQLHCIRLQSGGRLLSNHDHGARYTLLWGRLWKARNLVVFERRQLQPAIRIFYRKISDLSLLSTATNPPMIVPPAILLVVRFPPLA PLIKINVDGAVADLVGDALGLVVVELDFLYPSDGINRRWYNGYRITASSATADQAAFILSKPKKKLPEAAQETLRTSAFPSTHVKDKWSKNLYIGFDMLW KNRILKLVVSRDEGAGQPSPN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18190			Protein kinase family protein ...		Lus10043244 [exp]	0	1
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10023904 [exp]	3.2	0.9482
AT1G11920			Pectin lyase-like superfamily ...		Lus10018429 [exp]	3.7	0.8842
AT4G11530		CRK34	cysteine-rich RLK (RECEPTOR-li...		Lus10022285 [exp]	4.5	0.9482
AT1G71050		HIPP20	heavy metal associated isopren...		Lus10042946 [exp]	5.3	0.9449
					Lus10000380 [exp]	5.5	0.9482
					Lus10010383 [exp]	6.3	0.9482
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10037911 [exp]	7.4	0.9477
					Lus10009632 [exp]	8.1	0.9458
AT2G24280			alpha/beta-Hydrolases superfam...		Lus10024449 [exp]	8.9	0.9328
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10015092 [exp]	10.4	0.9297

Compare expression of checked genes

Lus10043244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.