Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 447 / 5e-155 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G48000 310 / 6e-101 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 290 / 4e-93 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48170 203 / 5e-60 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 196 / 3e-57 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 176 / 2e-49 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT2G14170 98 / 7e-22 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT3G66658 95 / 8e-21 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G24270 87 / 2e-18 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G54100 85 / 2e-17 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023626 [exp] 536 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 465 / 9e-162 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023625 [exp] 459 / 2e-159 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10019387 [exp] 459 / 6e-157 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 333 / 8e-110 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 333 / 1e-109 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10004238 [exp] 196 / 3e-59 AT1G74920 533 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042149 [exp] 201 / 4e-59 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10024261 [exp] 197 / 2e-55 AT3G03940 961 / 0.0 Protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G075000 [exp] 510 / 2e-179 AT3G24503 751 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Potri.015G074100 [exp] 341 / 1e-112 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 333 / 1e-109 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 302 / 9e-98 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.012G075600 [exp] 190 / 6e-55 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 189 / 2e-54 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 177 / 7e-50 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.008G106000 [exp] 124 / 2e-30 AT3G66658 1049 / 0.0 aldehyde dehydrogenase 22A1 (.1.2) Potri.001G242333 [exp] 101 / 4e-23 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G283100 [exp] 100 / 8e-23 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [flax] [poplar] ALDH-like PF00171 [flax] [poplar] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Lus10043245 pacid=23168286 polypeptide=Lus10043245 locus=Lus10043245.g ID=Lus10043245.BGIv1.0 annot-version=v1.0 ATGGCTAGCCACGTCAGTAACGGAAGTACGGATGCCTTCTTAACCGTGAAAGCCCCGCCGGCGGAGATAAAGTTCACCAAGCTGTTTATAGACGGCAAAT TCGTCGACTCCCTTTCAGGAAAAAGGTTTGAGACGATTGATCCAAGAACAGGGGAGGTGATAACAGAGGTATCAGAAGGAGATAAAGAGGACGGCGAGGA TAATGAACAAATTTGCGGACTTAATCGAGCAACACATAGAGGAGATCGCGACGCTCGACACCCTCAACGCCGGCAAACTGTTGAGTTGGGGCAAAGCGAT AGAAAAAAAATAGACATCCCATCCACGGCCAACTGTCTCCGGTACTACGCCGGAGCTGCCGACAAGATCCACGGAGAGGTGCTGAAGATGTCTCGGGAGC TTCATGCCTACACATTGCGGGAGCCGGTCGGGGTGGTGGGACACATCATCCCGTGGAATTTTCCGAGCACCATGTTCTTCATGAAGGTCAGCCCGGCCCT GGCCGCCGGTTGTACGATGGTCGTTAAGCCGGCCGAGCAAACCCCACTTTCCGCCTTGTTCTACGCCTATCTTGCCAAACAGGCGGGAATTCCTGACGGG GTGATTAACGTTGTGAATGGATTTGGCCCAACAGCCGGGGCGGCACTTGCTTCCCACATGGACGTTGACAAGCTGAGTTTTACTGGGTCAACCGAAGTAG GGAGGAAGGTGATGCAGGCAGCAGCGACCAGCAATCTGAAACAGGTATCACTTGAGTTGGGCGGCAAATCTCCTATGCTAATTTTCGACGATGCTGACAT TGATAAGGCTGCTGATCTCGCCCTCTTAGGCATCCTCTACAATAAGGGAGAAGTGTGTGTAGCAAGTTCGCGGGTGTATGTGCAGGAAGGAACATACGAT GAATTCGTCAGCAAGTTGGCTGTGAAAGCCAAAGATTGGGTCGTTGGTGATCCTTTCCACCCGGCTTCTCGTCTTGGCCCACAGGTCGATAAGCAACAAA CGATGGAAGAAGCAATCAAGTTGGCGAACAATACAAGGTATGGGTTAGCAGCAGGGATAGTGACCAACAACTTGGACATTGCAAACACAGTTTCAAGATC GATCAGAGCGGGAGTCATCTGGATTAACTGTTACTTTGCGTTCGATAATGACTGCCCTTACGGAGGGTACAAATCGAGTGGCTTCGAAAGGGACCTTGGT TTGGAGGCTCTTCACAAGTATCTTCATGTTAAGTCAGTTGTCACTCCCATTTACAACTCCCCTTGGCTATGA
AA sequence Show only first row Show all	>Lus10043245 pacid=23168286 polypeptide=Lus10043245 locus=Lus10043245.g ID=Lus10043245.BGIv1.0 annot-version=v1.0 MASHVSNGSTDAFLTVKAPPAEIKFTKLFIDGKFVDSLSGKRFETIDPRTGEVITEVSEGDKEDGEDNEQICGLNRATHRGDRDARHPQRRQTVELGQSD RKKIDIPSTANCLRYYAGAADKIHGEVLKMSRELHAYTLREPVGVVGHIIPWNFPSTMFFMKVSPALAAGCTMVVKPAEQTPLSALFYAYLAKQAGIPDG VINVVNGFGPTAGAALASHMDVDKLSFTGSTEVGRKVMQAAATSNLKQVSLELGGKSPMLIFDDADIDKAADLALLGILYNKGEVCVASSRVYVQEGTYD EFVSKLAVKAKDWVVGDPFHPASRLGPQVDKQQTMEEAIKLANNTRYGLAAGIVTNNLDIANTVSRSIRAGVIWINCYFAFDNDCPYGGYKSSGFERDLG LEALHKYLHVKSVVTPIYNSPWL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Lus10043245 [exp]	0	1
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10040868 [exp]	1.0	0.9397
AT1G62510			Bifunctional inhibitor/lipid-t...		Lus10041036 [exp]	3.2	0.8876
AT3G45070			P-loop containing nucleoside t...		Lus10033719 [exp]	3.9	0.8864
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Lus10034763 [exp]	4.0	0.8397
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Lus10016855 [exp]	5.5	0.8593
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031137 [exp]	6.9	0.8669
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10041508 [exp]	7.3	0.8516
AT5G06900		CYP93D1	"cytochrome P450, family 93, s...		Lus10005878 [exp]	8.9	0.8342
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Lus10006759 [exp]	11.5	0.8507
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	13.7	0.8235

Compare expression of checked genes

Lus10043245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.