Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043436 [exp] 85 / 5e-21 ND / Lus10014730 [exp] 53 / 1e-09 AT3G24490 49 / 4e-08 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 53 / 1e-08 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019568 [exp] 49 / 2e-08 AT3G24490 50 / 8e-09 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10017725 [exp] 42 / 4e-05 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10043246 pacid=23167912 polypeptide=Lus10043246 locus=Lus10043246.g ID=Lus10043246.BGIv1.0 annot-version=v1.0 ATGGACGACACCGATGATGATGACAGCTACCCACTCAAATCTTACACACCGAGCCACCGCACTACGAAGAAGAACAAATCTGCTTCACAGTCCTCCCACC GTCCCCTTCCCAGGTTCTACAACCACCGTTACGATGACGTCCAAAACAATGAAGAAGATGACGATGCCAACGACGATTTCCTGTGGTACTCAAAGAGGAT TAAGCAGCTCAAGAAGTCATCGGCTTCCAATTATGAATTCGCGGGATTGGAGTTGCAGAGCAAGCAAATGTTGGAGATAGCTCTGGCCGAGATTGCTAAA ATCAGAGATGAGGATGAGGATGATGATGATGATGGTAATGACCCTGAAAGCAATGTCAATAAAGAAAGAAAAGCTGAGGATGAGAGTGGTGATGATGATG ATTCTGGGGGGAATGTCAGCTAA
AA sequence Show only first row Show all	>Lus10043246 pacid=23167912 polypeptide=Lus10043246 locus=Lus10043246.g ID=Lus10043246.BGIv1.0 annot-version=v1.0 MDDTDDDDSYPLKSYTPSHRTTKKNKSASQSSHRPLPRFYNHRYDDVQNNEEDDDANDDFLWYSKRIKQLKKSSASNYEFAGLELQSKQMLEIALAEIAK IRDEDEDDDDDGNDPESNVNKERKAEDESGDDDDSGGNVS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10043246 [exp]	0	1
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	56.1	0.6818
AT4G36420			Ribosomal protein L12 family p...		Lus10028336 [exp]	56.6	0.6657
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042861 [exp]	74.4	0.6674
AT1G52620			Pentatricopeptide repeat (PPR)...		Lus10036090 [exp]	76.2	0.6723
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027615 [exp]	95.9	0.6608
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	166.3	0.6375
AT5G58030			Transport protein particle (TR...		Lus10036292 [exp]	168.3	0.6309
AT5G06810			Mitochondrial transcription te...		Lus10012021 [exp]	171.7	0.6373

Compare expression of checked genes

Lus10043246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.