Plant FIBer expression Database

Lus10043249 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G02220 260 / 2e-88 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019392
[exp]
384 / 5e-137 AT3G02220 274 / 7e-94 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G116800
[exp]
273 / 2e-93 AT3G02220 246 / 1e-82 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10217 DUF2039 Uncharacterized conserved protein (DUF2039)
Representative CDS sequence
>Lus10043249 pacid=23167989 polypeptide=Lus10043249 locus=Lus10043249.g ID=Lus10043249.BGIv1.0 annot-version=v1.0
ATGAGCAGTCGAAGCGGCCCCCCAAAGCACCAAAATCTATTTGCCTGGAAGCCCAAGGCCGGTATCAAGATCAATGAAACGGAGGTGGGTGGGAGGTTTA
GGCCATTGCCAGCGATTACGGGAGTGTGCCAAAGATGTAAAGAGCAGATCGACTGGAAGCGCCGCTATGGGAAGTACAAGACTCTCATCGAGCCTGCAAA
ATGCCAACAATGTTCCAAACGTGCAGTCCGACATGCCTACCATAATTTATGCTCTGGTTGCGCAAAGGAGCAAAAGGTTTGTGCAAAGTGTCGATGCCGT
GTGGACCACATTGTTGGAAGGGATGCTGCTGAAGTAGAGGCTGAGCAGAAGACCCTGGAGGATGCCATTAAAAATGCTCGAGAAAGAGATCGGAGGACCC
TCCTGCGCTCAATGAACAAAGGTATAAGCAACAACAAAACTTCAGAGAAGCCGGCAACCACAGATGGAAAGAAAGTTGGGGATCTGTTTCCTAGTGCATC
ACTTGAAGGGTATGCTGCCAAAGCAGCAGGAGGTCGTATTCCAAGTGTTGGGGACCTCGATGGAGATGATGGCGGAAATGAAGAAGTTGATGAGGAGGTG
AGTGATGAAGAAGGTGATGACGTGGGCGAGAATGATGAAGCTGAAAGTGGGAACGGTATTGAAGAAAAAGCGCATCAAGATCATCATTAG
AA sequence
>Lus10043249 pacid=23167989 polypeptide=Lus10043249 locus=Lus10043249.g ID=Lus10043249.BGIv1.0 annot-version=v1.0
MSSRSGPPKHQNLFAWKPKAGIKINETEVGGRFRPLPAITGVCQRCKEQIDWKRRYGKYKTLIEPAKCQQCSKRAVRHAYHNLCSGCAKEQKVCAKCRCR
VDHIVGRDAAEVEAEQKTLEDAIKNARERDRRTLLRSMNKGISNNKTSEKPATTDGKKVGDLFPSASLEGYAAKAAGGRIPSVGDLDGDDGGNEEVDEEV
SDEEGDDVGENDEAESGNGIEEKAHQDHH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G02220 unknown protein Lus10043249
[exp]
0 1
AT2G31140 Peptidase S24/S26A/S26B/S26C f... Lus10022921
[exp]
2.4 0.8998
AT3G15150 HPY2, ATMMS21 HIGH PLOIDY2, A. THALIANA METH... Lus10015968
[exp]
3.0 0.9015
AT5G34940 ATGUS3 glucuronidase 3 (.1.2.3) Lus10001923
[exp]
4.6 0.8714
AT5G27430 Signal peptidase subunit (.1) Lus10040138
[exp]
5.2 0.8561
AT1G76860 Small nuclear ribonucleoprotei... Lus10026326
[exp]
8.0 0.8561
AT5G58240 FHIT FRAGILE HISTIDINE TRIAD (.1.2) Lus10034436
[exp]
9.2 0.7963
AT3G02220 unknown protein Lus10019392
[exp]
9.6 0.8425
AT5G19490 CCAAT Histone superfamily protein (.... Lus10026780
[exp]
9.8 0.8487
AT3G11730 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPAS... Lus10036442
[exp]
10.7 0.8625
AT1G54250 NRPE8A, NRPB8A,... RNA polymerase Rpb8 (.1) Lus10039177
[exp]
10.8 0.8127

Lus10043249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.