Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24440 221 / 2e-66 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT5G57380 157 / 1e-42 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT2G18880 144 / 3e-38 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT4G30200 139 / 4e-36 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT1G20300 46 / 3e-05 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019393 [exp] 304 / 6e-99 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 302 / 2e-97 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 273 / 3e-86 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 159 / 5e-44 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 157 / 2e-43 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 134 / 2e-34 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10025841 [exp] 113 / 3e-27 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10011459 [exp] 85 / 9e-18 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10037533 [exp] 82 / 5e-17 AT1G20300 472 / 2e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076500 [exp] 266 / 1e-82 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G158676 [exp] 261 / 7e-81 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G091500 [exp] 182 / 3e-51 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 182 / 4e-51 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.002G111600 [exp] 175 / 9e-50 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.005G245500 [exp] 45 / 7e-05 AT1G20300 571 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF07227 [flax] [poplar] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Lus10043250 pacid=23168253 polypeptide=Lus10043250 locus=Lus10043250.g ID=Lus10043250.BGIv1.0 annot-version=v1.0 ATGAATCACCGGAATTTGGGAGTGAAAACTCGTGGATATGTAAAAATTCTGCCTGCCGAGCTGTCTTATCCATCGAGGACTCATTTTGCAAGAGATGTTC TTGCTGCGGACTCATTTTGTAAGAGATGTTCTTGCTGTATCTGTCATTCCTTTGACGAGAATAAAGACCCGAGTCTGTGGTTGTTCTGCACATCTGAATC CAGTGATGAGGATTCTTGTGGGCTCTCTTGTCACATTGAGTGTGCCTTCCAGCATGAAAAGGTTGGAGTTGTTGATCTCGGGCAACTCATGCAGCTAGAT GGCAGTTATTGCTGCGCTTCTTGTGGTAAAGTGTCTGGCATTCTAGAATCCTGGAAGAAGCAGCTGAGTATTGCTAAAGATGCCCGTCGTGTTGATGTGC TATGCTATAGAATAGACCTTAGTTATAGATTACTGGACAGAACTTCAAGATTCAAAGAGTTGCACGAATTCATAAAAGTTGCGAAAGCCAAGCTAGAGAC CGAGGTTGGCTCGATAAACGGTGTTTCTGCCAACTTGGCACGGGGCATTGTCAGCAGACTCCGCAATACGGAAATCCTAATAATCACTTCTTTCTTATTT TCCAGAGGGCTCACTGCCAGCAGCTTGCAGTCTCTAATTGCGGCAATCCGCTTCCGCCGTCGTCTTCTATACTTCCTCCCTCGTCCCTCACAATGCTTTC TTCAATCCTCATTCTCTTATTCCTCGGTCTCACAATCAATCAACCATCCAGGGCGTGAAGAATCCAACTCCAACGACGGCTCTGACAACCACGCATCCAC CATACTGCCACCGGAAGAAGCCGCCGCATGGTCGAGAGAAATTATATTCCTTAATCAAACGCCATTACCGCCACAACCCGAATCCAAAGCCTACTGCCTT CCCGATTTCACCATCCCATCTCTGATCTCCCACGGCTTCTCCCAACGCTATCTCTTTCCGGAGAGTCATCGCGATGTCATCCCTTTCCAACAGACACTCG CGTTATTCAATTGGGCAGTCAACCAGGAGACATTTTCATCTCTCTCCCTTGAACCCTGCAACGAGATACTGGAACTCGCTAAGAGATTGAAGCTCTCCAA TCTGGCATGGAAGATCCCTTGCCATCAATAA
AA sequence Show only first row Show all	>Lus10043250 pacid=23168253 polypeptide=Lus10043250 locus=Lus10043250.g ID=Lus10043250.BGIv1.0 annot-version=v1.0 MNHRNLGVKTRGYVKILPAELSYPSRTHFARDVLAADSFCKRCSCCICHSFDENKDPSLWLFCTSESSDEDSCGLSCHIECAFQHEKVGVVDLGQLMQLD GSYCCASCGKVSGILESWKKQLSIAKDARRVDVLCYRIDLSYRLLDRTSRFKELHEFIKVAKAKLETEVGSINGVSANLARGIVSRLRNTEILIITSFLF SRGLTASSLQSLIAAIRFRRRLLYFLPRPSQCFLQSSFSYSSVSQSINHPGREESNSNDGSDNHASTILPPEEAAAWSREIIFLNQTPLPPQPESKAYCL PDFTIPSLISHGFSQRYLFPESHRDVIPFQQTLALFNWAVNQETFSSLSLEPCNEILELAKRLKLSNLAWKIPCHQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	0	1
AT1G73970			unknown protein		Lus10000648 [exp]	2.0	0.9057
AT5G48040			Ubiquitin carboxyl-terminal hy...		Lus10011327 [exp]	3.0	0.8852
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	4.2	0.8790
AT1G54560		PCR1, ATXIE, XI...	MYOSIN XI E, Myosin family pro...		Lus10005521 [exp]	8.0	0.8806
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Lus10009139 [exp]	11.0	0.8860
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	11.6	0.8582
AT2G26350		PEX10, ATPEX10	peroxin 10 (.1)		Lus10020007 [exp]	11.8	0.8805
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10022861 [exp]	12.2	0.8639
AT1G69630			F-box/RNI-like superfamily pro...		Lus10008245 [exp]	13.2	0.7978
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10029888 [exp]	17.7	0.8332

Compare expression of checked genes

Lus10043250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.