Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24440 415 / 4e-138 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT5G57380 242 / 2e-71 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT4G30200 172 / 7e-46 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT2G18880 145 / 3e-37 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT2G18870 93 / 4e-21 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019393 [exp] 923 / 0 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019394 [exp] 694 / 0 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 271 / 2e-85 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 174 / 4e-46 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10042869 [exp] 164 / 3e-44 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10028170 [exp] 162 / 1e-43 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 155 / 7e-40 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158676 [exp] 586 / 0 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G076500 [exp] 574 / 0 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G091500 [exp] 231 / 3e-66 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G167800 [exp] 226 / 1e-64 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.002G111600 [exp] 170 / 1e-45 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF00041 [flax] [poplar] fn3 Fibronectin type III domain
Representative CDS sequence Show only first row Show all	>Lus10043251 pacid=23168341 polypeptide=Lus10043251 locus=Lus10043251.g ID=Lus10043251.BGIv1.0 annot-version=v1.0 ATGAACTTTCTGCATTTTAATGGGACAGTTTCAGGAGCACATTTCAATTTCTTAAGTTGGCCCTTCTCTATTCCAGTTTCTGGTGTTCAAAGCCTCTCTT CCAGCGTGCATAGCACTCCAGAGAAAAATAATAATTCCGATGTGGCTTCAAGAAGTTCAGAGCTAATTCAAGAGTTTCTGAAATCTGGTCCCAGAAAGGA ACTTCTCCGTACTTGCTTTGATAAGGACGATAAACAATCATCATCATCCAAAAGCAAAATGACTGAACTTAAGTCGGGTAGCAAAACGAACAAGAAGCAG GAAACAAAGAAAAATCCTGCCACCAATAATCAGTCTTCTTCGAAGAAGCAGAAAAGAAAGGGGGATAATCCTACGCGGATTGTGCATTCCTCTGATGAAT CTCCGGAATTTGGTAGTGAAAACTCGTGGATATGTAAAAATGCCGCCTGCCGAGCTATCTTATCCATCGAGGACTCATTTTGCAAAAGATGTTCTTGCTG TATCTGTCATTCCTTTGATGATGAGGATTCTTGTGGGCTCTCTTGTCACATTGAGTGTGCCTTCCAGCATGAAAAGGTTGGAGTTGTTGATCTCGGGCAA CTCATGCAGCTAGATGGCAGTTATTGCTGCGCTTCTTGTGGTAAAGTGTCTGGCATTCTAGAATCCTGGAAGAAGCAGCTGAGTATTGCTAAAGATGCCC GTCGTGTTGATGTGCTATGCTATAGAATAGACCTTAGTTATAGATTACTGGACAGAACTTCAAGATTCAAAGAGTTGCACGAATTCATAAAAGTTGCGAA AGCCAAGCTAGAGACCGAGGTTGGCTCGATAAACGGTGTTTCTGCCAACTTGGCACGGGGCATTGTCAGCAGACTCCCTGTAGCTGGCGATGTGCTGAAA CTTTGCTCTCTTGCAATTGAAAGAGCAGATGAATGGCTATCATCAACTACTAAAGTCAATTCTAATCTCAAAGAGGGCTCACTGCCAGCAGCTTGCAGGT TTTTCTTTGAAGAAGTAACATCTTCCTCCGTCATTATTATTCTGATCGAAATATCAGCTGCATCGTTTGCTGATGATATTAAGGGTTACAAACTGTGGTA TAGCAAGAGTCGAGAAGAGACGCCTCAAAAGGAACCTGTTAGTGTGTTCCCAAAGACTCAGAGGAGGATTCTGATAACAAATCTGCAGCCATGCACAGAG TATACATTTCGAATTATGTCATACACTGATTCTGGTGATTTAGGTCATTCAGAGGCCAAGTGTTTCACCAAAAGTGTTGACATTATTCGTAAGCATCCTC GTTCTTCTTCTGTGGTAGAAAATGGTAAGACGGATGATCATCCTAACGAAAGAGGGAGTGAATTCTCCGGATTCAGAGTCCGGGAGCTTGGGAAAATCAT ACGTATGGCGTGGGCACAAGAGCGAGCCGGCGTAGAAGGTTTCTGTAGTGCTGGCACTGACAAGTGTTGTGATGCTGTTGTGACCATAGAGAGGATGAAC GATGAGGTGCATGATTGCGATAGTACCCTCATCAATGGGGGATCTCCTTGTCGTGTCTCTCGAGGAAAACCAGGCTCCTTAGACGACAGCTTTGAGTATT GTGTGAAGACGATACGAATGCTGGAATGTGGAGGTCACATCGATCAGGAATTCAGACTGAAATTGCTGACGTGGTTTAGCTTGAGATCAACGGAACAGGA GCGGAGAGTGGTGCATACTTTCATTAGGACTCTGAATGATGACCATGGTAGCTTAGCCGAACAGTTGGTTGATTCGTTCTCGGATGTCGTATCCAGCAAG AGGCCTAGGAATGGATTCTGCAGCAAGTTATGGCATTAA
AA sequence Show only first row Show all	>Lus10043251 pacid=23168341 polypeptide=Lus10043251 locus=Lus10043251.g ID=Lus10043251.BGIv1.0 annot-version=v1.0 MNFLHFNGTVSGAHFNFLSWPFSIPVSGVQSLSSSVHSTPEKNNNSDVASRSSELIQEFLKSGPRKELLRTCFDKDDKQSSSSKSKMTELKSGSKTNKKQ ETKKNPATNNQSSSKKQKRKGDNPTRIVHSSDESPEFGSENSWICKNAACRAILSIEDSFCKRCSCCICHSFDDEDSCGLSCHIECAFQHEKVGVVDLGQ LMQLDGSYCCASCGKVSGILESWKKQLSIAKDARRVDVLCYRIDLSYRLLDRTSRFKELHEFIKVAKAKLETEVGSINGVSANLARGIVSRLPVAGDVLK LCSLAIERADEWLSSTTKVNSNLKEGSLPAACRFFFEEVTSSSVIIILIEISAASFADDIKGYKLWYSKSREETPQKEPVSVFPKTQRRILITNLQPCTE YTFRIMSYTDSGDLGHSEAKCFTKSVDIIRKHPRSSSVVENGKTDDHPNERGSEFSGFRVRELGKIIRMAWAQERAGVEGFCSAGTDKCCDAVVTIERMN DEVHDCDSTLINGGSPCRVSRGKPGSLDDSFEYCVKTIRMLECGGHIDQEFRLKLLTWFSLRSTEQERRVVHTFIRTLNDDHGSLAEQLVDSFSDVVSSK RPRNGFCSKLWH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043251 [exp]	0	1
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019394 [exp]	1.0	0.9071
AT3G22520			unknown protein		Lus10021916 [exp]	3.9	0.8601
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10043250 [exp]	4.2	0.8790
AT4G30920		AtLAP2, LAP2	leucyl aminopeptidase 2, Cytos...		Lus10035823 [exp]	6.3	0.8774
AT2G13440			glucose-inhibited division fam...		Lus10014348 [exp]	6.6	0.8875
AT1G12244			Polynucleotidyl transferase, r...		Lus10035777 [exp]	9.2	0.8585
AT1G08750			Peptidase C13 family (.1.2.3)		Lus10005520 [exp]	10.1	0.8319
AT4G21060			Galactosyltransferase family p...		Lus10036154 [exp]	13.1	0.8385
AT1G75010		ARC3	ACCUMULATION AND REPLICATION O...		Lus10035091 [exp]	14.1	0.8699
AT5G16030			unknown protein		Lus10017573 [exp]	14.2	0.8429

Compare expression of checked genes

Lus10043251 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.