Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24430 800 / 0 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT4G19540 179 / 1e-51 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT5G50960 129 / 6e-33 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT1G36272 69 / 1e-14 unknown protein AT5G24020 51 / 8e-07 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019395 [exp] 905 / 0 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10018779 [exp] 181 / 1e-51 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 181 / 4e-51 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10039219 [exp] 115 / 3e-28 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10027463 [exp] 114 / 9e-28 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10019468 [exp] 63 / 1e-11 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 62 / 3e-11 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 57 / 4e-09 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10038843 [exp] 49 / 4e-06 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G076600 [exp] 842 / 0 AT3G24430 835 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Potri.005G220500 [exp] 180 / 2e-52 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 176 / 1e-50 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.001G336900 [exp] 116 / 2e-28 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.004G080100 [exp] 49 / 3e-06 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF10609 [flax] [poplar] ParA NUBPL iron-transfer P-loop NTPase CL0232 [flax] [poplar] NifU PF01883 [flax] [poplar] FeS_assembly_P Iron-sulfur cluster assembly protein CL0232 [flax] [poplar] PF06155 [flax] [poplar] GBBH-like_N Gamma-butyrobetaine hydroxylase-like, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10043252 pacid=23168334 polypeptide=Lus10043252 locus=Lus10043252.g ID=Lus10043252.BGIv1.0 annot-version=v1.0 ATGCAGATTCTATCAGCTCCATCTTCCCTGCATCTTTCACTCGAATGCTTGAAGACTCACTCAAAGTCAGGAATTTCCTCGTTGCTTCAGTATTCCGTAC CGAATTCCTCGTCCTTAAGAAGCTGTATCTCAACTTTGTCTCGGAGGTCGTACTCTAGCTTCTGCTGCTTTACGACTAGAGCTGCTTCCACTGAAGTCGG TGCTTCTGTAACATCGGCCGAATTAAGCTCAGCCTTGGAGAGTGAAGTGCTGAAAGCCTTGTCGCAAATAATTGATCCTGATTTTGGAACGGACATAGTC ACTTGTGGTTTTGTCAAAGATTTGGCGATTGATGAAGCTCAAGGAAAGGTGTCGTTTAGGCTGGAGCTCACAACACCGGCTTGTCCAATCAAGGACTTGT TTGAGCAGCAGGCCAATGAGGTGGTTGCTCGGCTTCCATGGGTCAAGAGCGTTAATGTGACAATGTCAGCACAACCAGCTAAGCCTATCTATGCAGGGGA ACTTCCCGCTGGACTCCAGACCATCTCAAATATTGTGGCAGTTTCAAGTTGCAAAGGGGGTGTGGGCAAATCAACTGTAGCTGTAAATCTTGCGTATACT TTGGCTGATATGGGTGCTAGAGTTGGGATTTTTGACGCGGATGTCTATGGTCCAAGTTTACCAACCATGGTCTCTCCTGAAAACCGCTTGCTGGAGATGA ATCCAGAGAAACGGACAATTATCCCTACTGAATACTTGGGAGTCAAGTTGGTATCGTTTGGCTTTGCTGGACAAGGCCGTGCAATAATGAGGGGTCCAAT GGTGTCTGGAGTAATCGACCAACTTCTCACAACTACAGAGTGGGGAGAGCTGGATTATCTGATCATCGACATGCCTCCTGGAACTGGTGACATACAGCTT ACTCTATGCCAGGTTGTCCCATTGACTGCTGCTGTTATAGTCACCACCCCTCAGAAACTTGCATTTATTGATGTTGCAAAGGGTGTTCGGATGTTTTCAA AGCTTAAGGTGCCGTGCGTTGCTGTAGTGGAGAACATGTGCCACTTTGATGCTGACGGAAAACGCTTCTACCCTTTTGGCAGAGGATCAGGATCTGAGGC ATGTATCTTGGTCGTCAAGCAATTCGGAATTCCTCATCTCTTCGATCTTCCAATCAGACCAACTCTATCTGCTTCTGGAGATAGTGGAATGCCTGAAGTG GTAGCTAATCCTCAAGGTGAAGTCGCGAAGACTTTCCAGGAACTTGGAGTTTGTGTTGTTCAGCAATGTGCAAAGATACGTCAACAAGTTTCAACTGCTG TCACCTATGATAAATCAATCAAGGCAATCAAGGTGAAGGTACCAGACTCGGAAGAAGAGTTTCTTCTTCATCCTGCAATGGTGAGAAGAAATGATCGTTC AGCACAAAGCGTGGACGAATGGACAGGGGAGCAGAAACTGCAGTACACGGATATCCCGGAAGACATTGAACCGCTAGAAATCCGTCCAATGGGAAACTAT GCAGTGCAAATAACATGGCCGGATGGATTTAACCAGATTGCTCCCTATGATCAGTTGCAAACAATTGAAAGGTTGGTTGGCGGGTGCTGA
AA sequence Show only first row Show all	>Lus10043252 pacid=23168334 polypeptide=Lus10043252 locus=Lus10043252.g ID=Lus10043252.BGIv1.0 annot-version=v1.0 MQILSAPSSLHLSLECLKTHSKSGISSLLQYSVPNSSSLRSCISTLSRRSYSSFCCFTTRAASTEVGASVTSAELSSALESEVLKALSQIIDPDFGTDIV TCGFVKDLAIDEAQGKVSFRLELTTPACPIKDLFEQQANEVVARLPWVKSVNVTMSAQPAKPIYAGELPAGLQTISNIVAVSSCKGGVGKSTVAVNLAYT LADMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFAGQGRAIMRGPMVSGVIDQLLTTTEWGELDYLIIDMPPGTGDIQL TLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRFYPFGRGSGSEACILVVKQFGIPHLFDLPIRPTLSASGDSGMPEV VANPQGEVAKTFQELGVCVVQQCAKIRQQVSTAVTYDKSIKAIKVKVPDSEEEFLLHPAMVRRNDRSAQSVDEWTGEQKLQYTDIPEDIEPLEIRPMGNY AVQITWPDGFNQIAPYDQLQTIERLVGGC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	0	1
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Lus10016570 [exp]	1.0	0.9576
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	3.5	0.9493
AT2G21960			unknown protein		Lus10005779 [exp]	4.2	0.9436
AT5G20140			SOUL heme-binding family prote...		Lus10013345 [exp]	5.5	0.9334
AT5G22800		EMB86, EMB263, ...	EMBRYO DEFECTIVE 86, EMBRYO DE...		Lus10022640 [exp]	6.3	0.9433
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	6.7	0.9343
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	6.9	0.9313
AT1G50450			Saccharopine dehydrogenase (....		Lus10027349 [exp]	7.7	0.9291
AT4G15110		CYP97B3	"cytochrome P450, family 97, s...		Lus10039040 [exp]	7.9	0.9325
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Lus10001758 [exp]	9.6	0.9101

Compare expression of checked genes

Lus10043252 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.