Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13360 556 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 540 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT5G65940 191 / 7e-56 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 179 / 3e-51 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 172 / 8e-49 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G31810 155 / 4e-42 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 149 / 3e-40 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT1G06550 149 / 5e-40 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019396 [exp] 788 / 0 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 184 / 9e-52 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10010685 [exp] 164 / 1e-45 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 164 / 3e-45 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10020758 [exp] 162 / 6e-45 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 161 / 2e-44 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 144 / 1e-38 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 137 / 2e-36 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155700 [exp] 590 / 0 AT4G13360 611 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.006G156350 [exp] 587 / 0 AT4G13360 608 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.014G179000 [exp] 178 / 5e-51 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.001G156900 [exp] 158 / 3e-43 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.006G277300 [exp] 152 / 3e-41 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 145 / 5e-39 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 145 / 5e-39 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 147 / 6e-39 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 144 / 1e-38 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.002G057700 [exp] 144 / 2e-38 AT1G06550 592 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF00378 [flax] [poplar] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Lus10043253 pacid=23168222 polypeptide=Lus10043253 locus=Lus10043253.g ID=Lus10043253.BGIv1.0 annot-version=v1.0 ATGAAGAGCATCTTCTCGACGTCACGGCTCTTCTCCAGATCAGCGGCTCTCTTCACCTCCACTCGCTCCCCTCGACACGTTTCACCCCGCCTCTTCCTCT CCTGTAACTCCGCCGCTCTTCCCACTCGAAGTCTGGCTGCGATGGCGGCGTCTGCTGCTGACGAGTTCGTCAAGGGCAGTGTTCATCCTAATGGCGTCGC TGTCATCATTCTCGACCGTCCCAAAGCCCTCAACGCCATGAACTTAGGTGGTCTTTTTGTTTTGTCGACTGTGGAGGTGCTCGATTTCTTCGTCCTCATA ACGAATGACGTTGATTCATTTCTGGCTCTTTGTTATAAGGCAGATATGGACATTCGATACAAGAGTTTCCTTGATGAATGGGAGGCGGATCCAAACGTGA AATGCGTTCTGGTGGAAGGTAGCACTCCTCGGGCTTTCTGTGCAGGTATGGATATTAAAGGGGTTGTCGCTGAAATTCAGAAGGATAAAAATACGCCTCT GGTGCAGAAGTACAAAGGCAGTAGTTTATATGCAGGAGGTGATGTGAAGGCTATTACTACCAAAAATCAACTTCCCGATATGATTGAGGTTTTCACGGCA GAATACACTCTGATATGTAAAATTGCTGAATACAAGAAACCATATATAGCTTTTATGGATGGGATAACAATGGGATTTGGAATTGGCCTATCTGGACATG GTCGCTACCGAATTATAACAGAGAGGACGCTGCTTGCTATGCCTGAAAATGGGATTGGCTTGTTTCCTGATGTGGGATTTTCTTATATAGCAGCACAAAG TCCAGGAGAAGGATCAGTTGGTTTTTACTCTATGCGAGATCTTCTTGCAGGTGCTTATCTTGGATTGACAGGAAAGAGGGTTTCTTCTCCCTCTGATGCA TTGTTTGTTGGCCTCGGGACGCACTATGTCCCATCTGGAAACTTGAGCTCATTGAAGGACGAGCTTTTGGCTATTAACTTCTCACAAGACCCGCATGATG AAGTCAAAGGACTTCTAGCAAAGTACAAGCATGAACCTGATTCCGATGCCCAATTGAAATTACTTTTACCACGAATCATTTCAACCTTTGGTGGACATAA GTTAGTGAAGGACATTGCTGAAGAGCTCAAACAGCATAAACAGAGTGCTGATGCGAAAGTGTCCGAGTGGGCCACTGAAGCTTTTCAAGGTCTTGAAAAG GGTGCACCTTTTTCTCTTTGCTTGACGCAAAGCTATTTCTCTAAAGTTGCATCTGCCTGTGGAAGAACCTCCAATGACTTATCAACACTAAATGGTGTAA TGAAAACCGAGTATCGCATCGCGTTGAGATCTTCCCTGCGTAACGATTTTGCGGAAGGTGTCAGAGCCGTTTTGGTGGACAAAGATCAGAACCCCAAGTG GGATCCCCCAAGCTTGGAAGAAGTTGAACAGAATGAAGTGGAGTCTCTGTTTCAACCGTTGGGTTCAGAAACTCCGGAACTGGCCGTGTAA
AA sequence Show only first row Show all	>Lus10043253 pacid=23168222 polypeptide=Lus10043253 locus=Lus10043253.g ID=Lus10043253.BGIv1.0 annot-version=v1.0 MKSIFSTSRLFSRSAALFTSTRSPRHVSPRLFLSCNSAALPTRSLAAMAASAADEFVKGSVHPNGVAVIILDRPKALNAMNLGGLFVLSTVEVLDFFVLI TNDVDSFLALCYKADMDIRYKSFLDEWEADPNVKCVLVEGSTPRAFCAGMDIKGVVAEIQKDKNTPLVQKYKGSSLYAGGDVKAITTKNQLPDMIEVFTA EYTLICKIAEYKKPYIAFMDGITMGFGIGLSGHGRYRIITERTLLAMPENGIGLFPDVGFSYIAAQSPGEGSVGFYSMRDLLAGAYLGLTGKRVSSPSDA LFVGLGTHYVPSGNLSSLKDELLAINFSQDPHDEVKGLLAKYKHEPDSDAQLKLLLPRIISTFGGHKLVKDIAEELKQHKQSADAKVSEWATEAFQGLEK GAPFSLCLTQSYFSKVASACGRTSNDLSTLNGVMKTEYRIALRSSLRNDFAEGVRAVLVDKDQNPKWDPPSLEEVEQNEVESLFQPLGSETPELAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13360			ATP-dependent caseinolytic (Cl...		Lus10043253 [exp]	0	1
AT1G68750		ATPPC4	phosphoenolpyruvate carboxylas...		Lus10035050 [exp]	1.7	0.8656
AT2G29210			splicing factor PWI domain-con...		Lus10001561 [exp]	5.3	0.8770
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10017885 [exp]	10.2	0.8462
AT1G32240	GARP	KAN2, KANADI2	KANADI 2, Homeodomain-like sup...		Lus10030989 [exp]	10.7	0.8285
AT2G48020			Major facilitator superfamily ...		Lus10008179 [exp]	11.4	0.8593
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Lus10029194 [exp]	12.0	0.8336
AT5G48030		GFA2	gametophytic factor 2 (.1)		Lus10035855 [exp]	13.0	0.8556
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	13.7	0.8754
AT3G04610		FLK	flowering locus KH domain, RNA...		Lus10005530 [exp]	14.4	0.8629
AT1G71230		CSN5B, AJH2	COP9-signalosome 5B (.1)		Lus10026947 [exp]	15.1	0.8150

Compare expression of checked genes

Lus10043253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.