Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19950 281 / 1e-89 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) AT5G63540 50 / 3e-06 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019397 [exp] 822 / 0 AT5G19950 285 / 2e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10000162 [exp] 174 / 2e-52 AT5G19950 63 / 2e-12 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10022440 [exp] 50 / 4e-06 AT5G63540 452 / 1e-151 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2) Lus10016747 [exp] 46 / 5e-05 AT5G63540 297 / 5e-94 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G073100 [exp] 410 / 4e-139 AT5G19950 274 / 6e-87 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Potri.015G100200 [exp] 50 / 4e-06 AT5G63540 468 / 3e-158 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF08585 [flax] [poplar] RMI1_N RecQ mediated genome instability protein
Representative CDS sequence Show only first row Show all	>Lus10043254 pacid=23168312 polypeptide=Lus10043254 locus=Lus10043254.g ID=Lus10043254.BGIv1.0 annot-version=v1.0 ATGGAGGGAGAGAGCTCGAGGTCGGCCAAAATTACAGAGGATGTCATACAAACCCTAACCACCAGGGGTTGGTGTTTCGGTGATATCGATCGAGTCAAGG CGATTGTGTTTGTCCAATCAGGTTTGTCCGACGATGGCAAACCTTCCACCATCGCCGATTCCGTCGAATCCGAACTCCTCAACATGGACCTTAGGTCCTT CGGCGGCAAGTCGTTGCCGGAAGCCAGCCTTTTACCCAAAGCTTCCCATCTCCAAGGTCGCAAAGTTCTTCAGATATGTTCGGTAAGAGACGTAGCCTTA AGTACCATTGACGCCTTTTCAAGCTCCGGTCACCGGCGCCTCCTTAAGCTTGTCCTCACCGACGGACACACTGAGATACCTGCGATTGAGTACTCTCATT TGTCCTCTATCCCAAGCGACGTTGCTCCTGGTTACAAGATTCTTCTAGAGAACAAGTCTCCAATTCATAGTGGTATACTGTGCTTAAACCCTAAAGTGGT GACTCCGATTGGAGGCATTGTTCAATCGCTTCATGAAGAATGGCGTATGAATCAGAAGTACGCAGCTTTTTCACGTTCATCAATGAGGCCGACTCAGGAA ATGGGCGTGGCTGGTCCTCCTGCTTTTGAGAAGTTGCAAACTGGAATCTCTTTTATTCGTCCATCATCGAGTAACAGGGTTTATGATTACTTCCAGGTAA TTTCTAAAAGCAGCATGCCTGTAGCTGAAGAACTTGTACGTAAAGGTGAAGTCAGGTTAGATTATGCTCAAAATAGAACAGAGAACACTGTAGACAACCC AAAAACTGTGTTCCCCGAGGAGAATGCACGGTGGAAGCCACTCCGAAGTGCAATGAGACCCAATGAAGAAAACTTTGCGTCTACCTCAAGATCCACCTTC CCTGCCGCTGCTGAGAATGTTCAAAACAATGCAGATACTGCCAGCACTAGCAGTAACATGAAAACAACTGCACTTGCAGAAAGTAAGGAAGGAAAGACGA GCAACTCGTACAGTAGGCCAAAGGAAGTAGCTGAATCAGCCCCAGTGCAAAATCAAGTGGCTGCTCAAAAACTCCTCCAAAAGATGGCTCCTCAAAACCA ATATGATCAGCGGTACAGAGGCCGAGGCCGTAGACAACACAGGGGAAGGGGTAGACATGATGACGAACCTCAGACTTGGACATTAGAGGAGTGGCAAAAC AGGAACGATGGAGCTAAGCCGGGGATGGGAAACGAGTTTCCAGATACTAGTAATGACGAAGATTTAGCTTGGCAGTTGCAAAACCAGCTTGCTATGGAGG ATGCACATGTACAGAGAGGAACACAGGGCACAGTGGCAACAGACATTCGGATGTCCATGTTTAGCTTTGAAAGAGACGACGACCCGAGTCATGACATGGA GCGTGGAGGTAGAGGTAGAGGTAGAGGCAGAGGCAGAGGTGGGAGAGGTAGAGGGAGAGGAAGAGGTAGACGCGGTTAA
AA sequence Show only first row Show all	>Lus10043254 pacid=23168312 polypeptide=Lus10043254 locus=Lus10043254.g ID=Lus10043254.BGIv1.0 annot-version=v1.0 MEGESSRSAKITEDVIQTLTTRGWCFGDIDRVKAIVFVQSGLSDDGKPSTIADSVESELLNMDLRSFGGKSLPEASLLPKASHLQGRKVLQICSVRDVAL STIDAFSSSGHRRLLKLVLTDGHTEIPAIEYSHLSSIPSDVAPGYKILLENKSPIHSGILCLNPKVVTPIGGIVQSLHEEWRMNQKYAAFSRSSMRPTQE MGVAGPPAFEKLQTGISFIRPSSSNRVYDYFQVISKSSMPVAEELVRKGEVRLDYAQNRTENTVDNPKTVFPEENARWKPLRSAMRPNEENFASTSRSTF PAAAENVQNNADTASTSSNMKTTALAESKEGKTSNSYSRPKEVAESAPVQNQVAAQKLLQKMAPQNQYDQRYRGRGRRQHRGRGRHDDEPQTWTLEEWQN RNDGAKPGMGNEFPDTSNDEDLAWQLQNQLAMEDAHVQRGTQGTVATDIRMSMFSFERDDDPSHDMERGGRGRGRGRGRGGRGRGRGRGRRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19950			Domain of unknown function (DU...		Lus10043254 [exp]	0	1
AT4G10090		ELP6	elongator protein 6 (.1)		Lus10040357 [exp]	6.6	0.7991
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	7.1	0.7800
AT1G69550			disease resistance protein (TI...		Lus10040368 [exp]	10.1	0.7481
AT5G52140			RING/U-box superfamily protein...		Lus10005768 [exp]	10.4	0.6898
AT5G54850			unknown protein		Lus10043054 [exp]	12.6	0.7937
AT4G23440			Disease resistance protein (TI...		Lus10032275 [exp]	13.3	0.7767
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	13.9	0.7344
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	18.8	0.7761
AT2G04560		AtLpxB	lipid X B, transferases, trans...		Lus10029959 [exp]	21.6	0.7494
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	22.1	0.7509

Compare expression of checked genes

Lus10043254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.