Plant FIBer expression Database

Lus10043256 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G02145 627 / 0 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
AT5G14850 50 / 2e-06 Alg9-like mannosyltransferase family (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019399
[exp]
820 / 0 AT1G02145 712 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Lus10033296
[exp]
55 / 8e-08 AT5G14850 697 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Lus10033341
[exp]
54 / 2e-07 AT5G14850 701 / 0.0 Alg9-like mannosyltransferase family (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G139200
[exp]
646 / 0 AT1G02145 706 / 0.0 EMS-MUTAGENIZED BRI1\(BRASSINOSTEROID INSENSITIVE 1\) SUPPRESSOR 4, homolog of asparagine-linked glycosylation 12 (.1.2.3.4)
Potri.018G098700
[exp]
47 / 2e-05 AT5G14850 720 / 0.0 Alg9-like mannosyltransferase family (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF03901 Glyco_transf_22 Alg9-like mannosyltransferase family
Representative CDS sequence
>Lus10043256 pacid=23168091 polypeptide=Lus10043256 locus=Lus10043256.g ID=Lus10043256.BGIv1.0 annot-version=v1.0
ATGTTAGGATCGATAGCTGTGTTTTATGCGCTTATGGCGCCGTACACCAAGGTTGAAGAAAGCTTCAACGTTCAGGCGATGCATGACATTCTTTTCCATC
GTCATCACTTGGATAGTTATGATCACTTGGAGTTCCCTGGCGTTGTTCCTCGCACTTTCATTGGAGCATTGCTGATTTCAGCATTAGCATCCCCCATACT
TTTGGCAAAGAGCTTCCTGCAGTTGCCAAAACTTTATGCACTCATCGCAGATACTACTTTCTTTCTCTTTGCTATTGCTAGTTCGCTTGGCATTGGGTTC
CATGGTATTAGGAACCTTGAGGTTAGGCAGAAGTTTGGCCATCAAGTGGAATGGTTCTTTGTGGTACTAACGGCGTTTCAGTTTCACTTGCTGTTCTATT
GCACAAGACCACTTCCTAATATTTTTGCTTTGGGTTTAGTCAACTTGGCTTATGGGTATTGGCTCAAGGGGAAAAATTATGCTGCCCTGAATTGTCTGAT
CTTTGCTGCAGTAGTCTTCAGATGTGACATGCTGTTACTTCTTGGTCCTCTTGGCTTGCAGCTTTTGTTGGCTAGATCTGTGTCAATATTTGGTGGAATC
AAATACTGCCTAGGCATTGCACTATTGTCTATAGGTCTTACTATGCTCATTGACTCAATTATGTGGAGACGTGTATTATGGCCAGAATTTGAAGTATTTT
GGTTCAATTCTATTCTAAACCGAAGTTCTGAGTGGGGTACACATTCTCTCCATTGGTACTTCACTTCAGCTCTCCCCCGTTCACTACTTGCTGCATATCC
TCTTTCTATGCTTGGAGTTATACTAGATCGAAGAGTTCGGCATTTTGTTTTTCCGGTTGTTACATTCATTTTCCTTTACTCCAAGCTTCCACACAAAGAA
CTACGATTCATCATTAGCTCTGTTCCAATGTTTAACCTTTCTGCAGCAGTTGCAGCAAGCAGAGTCTACAACAATAGGAAGAAGACACTATGGAAGTTGT
TTAATCTTATCATGTTGGGACTATTCTTGATCAGTCTAGGGTGTACTGCAGTGACTTTCATGGCATCTTATGAAAATTATCCCAGTGGTCATGCATTAAT
GGAGCTGCACCAGATTGGCGATATTGGTGACAAGGATCAAGTGTTAGTTCATATTGATACCTTCTCAGCCATGAATGGAATATCACGGTTTTCAGAAAAT
GGTTCTGTATGGAGGTACACTAAAGAAGAGCGGATTCCTCTTGAAGAGTACAAGCACAGAAATTTTACATATCTCGTAAGTGAGCATCCAGATGTTGATG
GGTACAAATGTTTATTTGCTGCGAATGGCTTCTCAAGGATTCTCCTTAAACGTGGCTTCCCTCCCATTTCCCTGGTGAAGGAGGCTAAATTATACGTTCA
TGGGAACGTGGAAGTCTGGGCTATTGCAGAGAAAAAATGGCGGGGATGCTCTTAA
AA sequence
>Lus10043256 pacid=23168091 polypeptide=Lus10043256 locus=Lus10043256.g ID=Lus10043256.BGIv1.0 annot-version=v1.0
MLGSIAVFYALMAPYTKVEESFNVQAMHDILFHRHHLDSYDHLEFPGVVPRTFIGALLISALASPILLAKSFLQLPKLYALIADTTFFLFAIASSLGIGF
HGIRNLEVRQKFGHQVEWFFVVLTAFQFHLLFYCTRPLPNIFALGLVNLAYGYWLKGKNYAALNCLIFAAVVFRCDMLLLLGPLGLQLLLARSVSIFGGI
KYCLGIALLSIGLTMLIDSIMWRRVLWPEFEVFWFNSILNRSSEWGTHSLHWYFTSALPRSLLAAYPLSMLGVILDRRVRHFVFPVVTFIFLYSKLPHKE
LRFIISSVPMFNLSAAVAASRVYNNRKKTLWKLFNLIMLGLFLISLGCTAVTFMASYENYPSGHALMELHQIGDIGDKDQVLVHIDTFSAMNGISRFSEN
GSVWRYTKEERIPLEEYKHRNFTYLVSEHPDVDGYKCLFAANGFSRILLKRGFPPISLVKEAKLYVHGNVEVWAIAEKKWRGCS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Lus10043256
[exp]
0 1
AT2G06005 FIP1 FRIGIDA interacting protein 1 ... Lus10021558
[exp]
4.2 0.7606
AT3G33530 Transducin family protein / WD... Lus10043261
[exp]
6.3 0.7342
AT3G54860 ATVPS33 VACUOLAR PROTEIN SORTING 33, S... Lus10037969
[exp]
6.7 0.7487
AT1G30825 DIS2, ARPC2, AR... DISTORTED TRICHOMES 2, ACTIN-R... Lus10008071
[exp]
14.3 0.7361
AT5G02130 NDP1 Tetratricopeptide repeat (TPR)... Lus10010858
[exp]
16.6 0.6988
AT1G47550 SEC3A exocyst complex component sec3... Lus10015090
[exp]
18.1 0.7514
AT3G61415 ASK21 SKP1-like 21 (.1.2) Lus10014770
[exp]
21.0 0.7061
AT3G59490 unknown protein Lus10013685
[exp]
31.7 0.6935
AT5G39510 ZIG1, SGR4, ATV... SHOOT GRAVITROPSIM 4, VESICLE ... Lus10000565
[exp]
33.0 0.6999
AT5G17620 unknown protein Lus10001340
[exp]
36.8 0.7090

Lus10043256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.